Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   R8625_RS09010 Genome accession   NZ_AP026923
Coordinates   1743845..1744465 (-) Length   206 a.a.
NCBI ID   WP_317649142.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738845..1749465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS08985 (PC0054_17590) recA 1739223..1740389 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  R8625_RS08990 (PC0054_17600) cinA 1740444..1741700 (-) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  R8625_RS08995 (PC0054_17610) brpA 1741785..1742801 (-) 1017 WP_317649139.1 biofilm formation/cell division transcriptional regulator BrpA -
  R8625_RS09000 (PC0054_17620) - 1742809..1743327 (-) 519 WP_317649140.1 GNAT family N-acetyltransferase -
  R8625_RS09005 (PC0054_17630) tsaE 1743317..1743760 (-) 444 WP_317649141.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R8625_RS09010 (PC0054_17640) comM 1743845..1744465 (-) 621 WP_317649142.1 hypothetical protein Regulator
  R8625_RS09015 (PC0054_17650) - 1744848..1745711 (-) 864 WP_001093620.1 helix-turn-helix domain-containing protein -
  R8625_RS09020 (PC0054_17660) - 1745903..1746073 (+) 171 WP_001227862.1 PhrA family quorum-sensing system peptide -
  R8625_RS09025 (PC0054_17670) pneA1 1746176..1746400 (+) 225 WP_000181087.1 two-peptide bacteriocin subunit PneA1 -
  R8625_RS09030 (PC0054_17680) pneA2 1746407..1746595 (+) 189 WP_000786759.1 two-peptide bacteriocin subunit PneA2 -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23510.64 Da        Isoelectric Point: 10.1254

>NTDB_id=98209 R8625_RS09010 WP_317649142.1 1743845..1744465(-) (comM) [Streptococcus pneumoniae strain PZ900700054]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTVLATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIATLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=98209 R8625_RS09010 WP_317649142.1 1743845..1744465(-) (comM) [Streptococcus pneumoniae strain PZ900700054]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCTTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTGTTTTAGCAACACTTCTTTTCTTAAGAAACCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGTTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGCTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.029

100

0.99
  comM Streptococcus pneumoniae R6

99.029

100

0.99
  comM Streptococcus pneumoniae TIGR4

99.029

100

0.99
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment