Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHI42_RS30630 Genome accession   NZ_CP151953
Coordinates   7105781..7107547 (-) Length   588 a.a.
NCBI ID   WP_342421616.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL E2-0178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7100781..7112547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI42_RS30610 (MHI42_30610) - 7101063..7101896 (+) 834 WP_171717289.1 carbohydrate ABC transporter permease -
  MHI42_RS30615 (MHI42_30615) - 7101920..7102945 (+) 1026 WP_342421613.1 glycoside hydrolase family 130 protein -
  MHI42_RS30620 (MHI42_30620) - 7102974..7103936 (+) 963 WP_342421614.1 alpha/beta fold hydrolase -
  MHI42_RS30625 (MHI42_30625) - 7104100..7105689 (+) 1590 WP_342421615.1 diguanylate cyclase -
  MHI42_RS30630 (MHI42_30630) rcrQ 7105781..7107547 (-) 1767 WP_342421616.1 ABC transporter ATP-binding protein Regulator
  MHI42_RS30635 (MHI42_30635) rcrP 7107547..7109304 (-) 1758 WP_342421617.1 ABC transporter ATP-binding protein Regulator
  MHI42_RS30640 (MHI42_30640) - 7109531..7110052 (-) 522 WP_342421618.1 hypothetical protein -
  MHI42_RS30645 (MHI42_30645) - 7110099..7110842 (-) 744 WP_342421619.1 hypothetical protein -
  MHI42_RS30650 (MHI42_30650) - 7110883..7111449 (-) 567 WP_342421620.1 papain-like cysteine protease family protein -
  MHI42_RS30655 (MHI42_30655) - 7111677..7112234 (-) 558 WP_342421621.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64082.32 Da        Isoelectric Point: 6.6131

>NTDB_id=981968 MHI42_RS30630 WP_342421616.1 7105781..7107547(-) (rcrQ) [Paenibacillus sp. FSL E2-0178]
MKMKTKAKGQNTWSKLLRYCRKYVPVIVIALICAAAGTVLTLLGPDMLSEITDKITAGLAGGIDMDGIAAIGITLVVIYA
ISAVLSLSQGLIMSNITQKISKKLRTDLAHKMNRLPISYYNKSATGDILSRVTNDVDTIGQAMNQSIGTVVTAVAMFIGS
IIMMLRTNVIMTLTAIVATIIGFGLMAVIMKKSQKYFASQQEFLGKINGHVEEVYTGHNVVKAYNGEAQMRTTFQELNQG
LKNSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLALDGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGG
RVFEFLEEAEMEDESRKENTLATAAGKVSFDQVKFAYENSGNLVIKNFSTEVKPGQKVAIVGPTGAGKTTLVNLLIRFNE
LTGGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLIYNQQNITDEKLVEACKAVGLHRFIQSLSDGYDTVLN
DKVNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDI
LESGSHTELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=981968 MHI42_RS30630 WP_342421616.1 7105781..7107547(-) (rcrQ) [Paenibacillus sp. FSL E2-0178]
ATGAAGATGAAAACCAAAGCTAAAGGACAGAATACCTGGAGCAAGCTGCTCCGTTACTGCCGTAAATACGTTCCGGTGAT
CGTCATTGCGCTGATCTGCGCGGCGGCCGGAACCGTGCTCACCCTGCTCGGTCCGGATATGCTCTCCGAGATTACGGACA
AAATCACTGCCGGTCTCGCAGGCGGGATCGATATGGACGGCATTGCTGCCATCGGCATTACCCTCGTCGTGATCTACGCC
ATCAGCGCCGTGCTCTCACTCTCGCAGGGCCTGATCATGTCGAATATTACCCAGAAGATCTCCAAGAAATTAAGAACCGA
TCTGGCTCATAAGATGAACCGGCTCCCAATCTCCTACTACAATAAGTCGGCCACAGGGGATATCCTCTCCCGGGTAACGA
ATGATGTGGATACCATCGGCCAGGCGATGAACCAGAGCATAGGTACAGTCGTAACCGCCGTAGCCATGTTCATCGGTTCG
ATCATCATGATGCTCCGGACCAATGTAATTATGACCCTTACCGCTATCGTAGCGACAATTATCGGCTTCGGCCTGATGGC
GGTTATTATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAATTCTTGGGCAAAATCAACGGTCATGTTGAGGAAG
TCTATACCGGGCATAATGTTGTAAAAGCCTACAACGGTGAAGCGCAGATGCGCACCACCTTCCAGGAACTGAATCAGGGG
CTGAAGAACAGCGCCTTCAAAGCGCAATTCCTCTCCGGGCTGATGCCGCCGCTAATGGGCTTTATCGGTAATCTTGGTTT
CGTTGCCGTCTGTGTCGTTGGCGCTGTACTGGCCTTGGATGGAACTATCTCCTTCGGGGTTATCGTCGCCTTCATTATGT
ATGTTCGTTACTTCACCCAGCCGTTATCCCAGATCGCCCAGGCCGCGCAGAATCTGCAATCGGCATCGGCCGCAGGCGGA
CGCGTGTTTGAATTCCTCGAAGAAGCGGAAATGGAAGACGAGAGCCGCAAAGAGAACACACTGGCAACTGCCGCAGGCAA
AGTAAGCTTTGACCAGGTGAAATTCGCTTATGAGAATTCCGGGAACCTGGTGATCAAAAACTTCTCGACAGAAGTGAAGC
CGGGGCAAAAGGTGGCCATCGTCGGCCCGACCGGCGCAGGCAAAACTACGCTCGTCAATCTGCTCATCCGCTTCAATGAG
CTGACCGGCGGAGAAATCTACATCGATGACACACCGATCAGCAGCCTGACCCGGGAGAACATCCACGATTTGTTCTGCAT
GGTGCTGCAGGATACCTGGCTGTTTGAAGGAACAATCAGGGAGAACCTGATCTACAATCAGCAGAATATCACGGACGAGA
AGCTTGTAGAAGCCTGCAAGGCCGTTGGCTTGCACCGCTTCATTCAGAGCCTTAGCGACGGATATGATACCGTACTGAAC
GATAAGGTCAACCTGTCCGCCGGACAAAAACAGCAGCTGACCATTGCCCGCGCGATGCTGAAGGATGCGCCGATGCTCAT
TCTTGACGAAGCTACAAGCTCCGTGGATACCCGGACTGAGCTGCTGATTCAGCAGGCGATGGATCAGCTGATGGAGGGCA
GAACCTCCTTCGTCATCGCCCACCGGCTGTCCACGATCAAGAACGCCGATGTGATTCTGGTCCTGAAGGACGGCGATATC
CTGGAAAGCGGCAGCCATACAGAATTGCTGGCGAAGAACGGATTCTATGCCGAGCTCTATAACAGCCAGTTTGAGCAGGC
TTCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(28-302)

ABC transporter (ABC_tran)

(366-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.959

98.469

0.551

Multiple sequence alignment