Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MHI42_RS30635 Genome accession   NZ_CP151953
Coordinates   7107547..7109304 (-) Length   585 a.a.
NCBI ID   WP_342421617.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL E2-0178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7102547..7114304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI42_RS30620 (MHI42_30620) - 7102974..7103936 (+) 963 WP_342421614.1 alpha/beta fold hydrolase -
  MHI42_RS30625 (MHI42_30625) - 7104100..7105689 (+) 1590 WP_342421615.1 diguanylate cyclase -
  MHI42_RS30630 (MHI42_30630) rcrQ 7105781..7107547 (-) 1767 WP_342421616.1 ABC transporter ATP-binding protein Regulator
  MHI42_RS30635 (MHI42_30635) rcrP 7107547..7109304 (-) 1758 WP_342421617.1 ABC transporter ATP-binding protein Regulator
  MHI42_RS30640 (MHI42_30640) - 7109531..7110052 (-) 522 WP_342421618.1 hypothetical protein -
  MHI42_RS30645 (MHI42_30645) - 7110099..7110842 (-) 744 WP_342421619.1 hypothetical protein -
  MHI42_RS30650 (MHI42_30650) - 7110883..7111449 (-) 567 WP_342421620.1 papain-like cysteine protease family protein -
  MHI42_RS30655 (MHI42_30655) - 7111677..7112234 (-) 558 WP_342421621.1 SMI1/KNR4 family protein -
  MHI42_RS30660 (MHI42_30660) - 7112486..7113499 (+) 1014 WP_342424836.1 suppressor of fused domain protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64290.58 Da        Isoelectric Point: 5.2827

>NTDB_id=981969 MHI42_RS30635 WP_342421617.1 7107547..7109304(-) (rcrP) [Paenibacillus sp. FSL E2-0178]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSEMSEIITAGAWMLLCALGSLATSIVVAGIAA
RIAADLSARLRANLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKITGKSWQWTLA
TGASVGLLVLIVAVSVTLVLPKFKKLQQLTDNLNRVSRENLNGLRVIRAYNAESYQEEKFASANNELTRTNLFANNVMTT
LMPSISLIMSGLSLSIYWIGAVLIQAAEGTAKMGLFSDMIVFSSYAMQVVMAFMMLIIIFILLPRAQVSAKRINEVLETA
PSLKNGSITHFPVKREDELEFRGVSFKYPDAEDYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQVLRNKMGYVSQKAVLFGGTVASNIAFGENGAGEVLSSDIVDAVYTSQSSEFVEKLEGNYEAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKEAHASTMLIVAQRIGTIKDADKIIVLEAGQIAGMGT
HDELMQTCAVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=981969 MHI42_RS30635 WP_342421617.1 7107547..7109304(-) (rcrP) [Paenibacillus sp. FSL E2-0178]
ATGTTGAAATTACTGAAGAACCTGGAGCCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATTGCGCAGGT
CTGGCTGGACCTGGAGCTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACCCCGGGCAGCGAAATGAGTGAGA
TCATTACGGCCGGAGCCTGGATGCTGCTCTGTGCGCTCGGCAGTCTGGCGACCTCGATTGTCGTGGCAGGGATTGCCGCC
AGAATCGCGGCCGACCTGTCAGCCAGATTACGCGCCAATTTGTTCGATAAGGTGCAGTCCTTCTCCATGGAGGAGATCAG
CAACTTCTCGACCGCCAGCCTGATTACCCGCTCCACGAATGATATCACCCAGGTGCAGATGCTGATTGTCATCGGCTTAC
AGCTGCTGGTCAAGGCACCTATCCTTGCCGTATGGGCAATCCTCAAGATTACGGGTAAAAGCTGGCAGTGGACGCTGGCG
ACAGGCGCCTCTGTTGGGCTGCTGGTACTGATTGTCGCAGTCAGCGTCACTCTCGTTCTTCCTAAATTCAAAAAGCTGCA
ACAGTTAACGGACAACCTGAACCGCGTATCCAGAGAAAATCTGAACGGTCTGCGGGTCATCCGGGCCTACAATGCCGAGA
GCTATCAGGAAGAGAAATTCGCTTCTGCCAATAATGAGCTTACCCGCACCAATTTGTTCGCCAACAACGTAATGACCACG
CTGATGCCGAGTATCTCCTTAATCATGAGCGGACTCAGCCTCTCGATCTATTGGATCGGAGCCGTGCTTATCCAAGCCGC
CGAGGGCACGGCCAAGATGGGATTGTTCTCGGATATGATCGTCTTCTCATCGTACGCGATGCAGGTCGTAATGGCTTTTA
TGATGCTGATTATTATCTTCATCCTGCTGCCCCGTGCCCAGGTATCGGCCAAACGTATCAACGAAGTGCTGGAAACTGCG
CCTAGCCTGAAGAACGGATCAATCACTCATTTCCCTGTGAAGCGTGAGGATGAGCTTGAGTTCAGGGGAGTCAGCTTCAA
ATATCCTGACGCAGAGGATTATGTGCTGGAGAATATCAGCTTTACGGCGAAGCAAGGGGAGACGGTTGCTTTTATCGGCT
CAACAGGCTGCGGCAAAAGTACGCTCGTTAATCTCATTCCACGTTTCTATGATGCTACTGAAGGCGAAGTGCTAGTGAAC
GGCATCAATGTCAAAGAATACGACCAGCAGGTGCTGCGTAATAAAATGGGCTATGTCTCCCAGAAGGCGGTACTGTTCGG
CGGAACGGTGGCTTCGAATATTGCTTTTGGCGAGAACGGTGCCGGTGAGGTGCTCAGCTCCGATATTGTAGATGCGGTGT
ACACGTCCCAGTCCTCTGAATTTGTGGAAAAGCTGGAGGGCAACTACGAGGCCCACATCGCCCAAGGCGGCTCCAATCTG
TCCGGCGGACAGAAGCAGCGGCTGTCGATTGCCAGAGCGATTGCCCGGCGCCCGGAAATCTTGATCTTCGATGATTCGTT
CTCGGCGCTTGACTATAAGACGGACCGCAAGCTGCGCAGCGAGCTGAAGAAGGAGGCTCATGCGTCCACGATGCTGATCG
TCGCCCAGCGCATTGGTACGATTAAAGACGCCGACAAAATCATCGTGCTGGAAGCCGGGCAAATTGCCGGTATGGGCACG
CATGACGAATTAATGCAGACCTGCGCCGTCTATCAGGAAATTGCTTACTCACAGCTGACCAAGGAGGAGCTCGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.342

100

0.523

Multiple sequence alignment