Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ABXS88_RS09585 Genome accession   NZ_AP031572
Coordinates   2060380..2061111 (+) Length   243 a.a.
NCBI ID   WP_353671819.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055380..2066111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS09575 (OLK001_18810) thiL 2056389..2057408 (+) 1020 WP_353671817.1 thiamine-phosphate kinase -
  ABXS88_RS09580 (OLK001_18820) - 2057556..2060261 (+) 2706 WP_353671818.1 phycobilisome rod-core linker polypeptide -
  ABXS88_RS09585 (OLK001_18830) ysxA/radC 2060380..2061111 (+) 732 WP_353671819.1 DNA repair protein RadC Machinery gene
  ABXS88_RS09590 (OLK001_18840) - 2061116..2061586 (+) 471 WP_353671820.1 hypothetical protein -
  ABXS88_RS09595 (OLK001_18850) - 2061813..2063717 (+) 1905 WP_353671821.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABXS88_RS09600 (OLK001_18860) - 2063727..2064158 (-) 432 WP_353671822.1 VOC family protein -
  ABXS88_RS09605 (OLK001_18870) - 2064240..2064464 (-) 225 WP_353671823.1 riboflavin synthase subunit alpha -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26792.97 Da        Isoelectric Point: 7.6516

>NTDB_id=98183 ABXS88_RS09585 WP_353671819.1 2060380..2061111(+) (ysxA/radC) [Synechocystis sp. LKSZ1]
MAYRLRIADLPSTERPRERLLQVGAKGLTSAELLAILLATGQGKGKLSAVGLGQHILQQLGEHRRDPLDVLREIHPQELM
AFPGIGPAKATTILAAVELGRRVFQGRPLERMLIDSPASAAQALSQDLMWQAQEHFALVMLDVKNRLLATKIITIGTATE
TLIHPREIFREAIKQGANRLIVAHNHPSGSLEPSPEDLNLTQLLLQAGQFLQVPVLDHLILGNGNHYSLRQNTGLWEQWP
QGD

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98183 ABXS88_RS09585 WP_353671819.1 2060380..2061111(+) (ysxA/radC) [Synechocystis sp. LKSZ1]
ATGGCCTATCGTTTACGCATTGCTGACCTCCCCAGTACCGAACGGCCCCGCGAACGCCTATTGCAAGTAGGGGCCAAGGG
CCTGACCAGCGCTGAATTATTGGCGATCCTCCTGGCCACGGGTCAAGGCAAGGGCAAACTCTCCGCTGTAGGCCTCGGCC
AACATATTCTTCAACAACTGGGAGAACATCGGCGCGACCCCTTGGATGTGCTACGGGAAATTCATCCCCAGGAATTGATG
GCCTTTCCCGGTATTGGCCCTGCTAAAGCAACAACAATCCTCGCAGCGGTAGAATTGGGGCGGCGGGTTTTTCAAGGCCG
TCCCCTGGAACGGATGCTGATCGATAGTCCCGCCAGTGCCGCCCAAGCCCTAAGCCAAGACCTGATGTGGCAGGCCCAGG
AGCACTTTGCCTTGGTGATGCTAGATGTCAAAAATCGGCTCTTAGCGACCAAAATTATCACCATTGGCACCGCCACTGAA
ACCCTGATCCATCCCCGCGAAATTTTTCGAGAGGCCATTAAACAGGGGGCCAATCGTCTAATTGTGGCCCATAATCATCC
TTCCGGTAGTTTGGAACCGAGCCCTGAAGATCTGAACCTGACCCAACTCCTCCTCCAAGCCGGTCAATTTCTCCAGGTGC
CAGTGCTGGATCATTTAATCCTAGGCAACGGCAACCACTATAGTCTGCGCCAAAATACCGGACTGTGGGAACAATGGCCC
CAGGGAGATTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(114-232)

UPF0758 N-terminal (UPF0758_N)

(7-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.529

93.416

0.379

Multiple sequence alignment