Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABXS88_RS08155 Genome accession   NZ_AP031572
Coordinates   1730651..1731778 (+) Length   375 a.a.
NCBI ID   WP_353674678.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1725651..1736778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS08145 (OLK001_15900) - 1726980..1729520 (-) 2541 WP_353674676.1 O-antigen ligase family protein -
  ABXS88_RS08150 (OLK001_15910) - 1729591..1730634 (+) 1044 WP_353674677.1 thiamine phosphate synthase -
  ABXS88_RS08155 (OLK001_15920) recF 1730651..1731778 (+) 1128 WP_353674678.1 DNA replication/repair protein RecF Machinery gene
  ABXS88_RS08160 (OLK001_15930) - 1731771..1733357 (-) 1587 WP_353674679.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  ABXS88_RS08165 (OLK001_15940) - 1733694..1733966 (+) 273 WP_353674680.1 hypothetical protein -
  ABXS88_RS08170 (OLK001_15950) - 1733963..1735270 (-) 1308 WP_353674681.1 HAMP domain-containing sensor histidine kinase -
  ABXS88_RS08175 (OLK001_15960) crtB 1735359..1736288 (-) 930 WP_353674682.1 15-cis-phytoene synthase CrtB -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42881.00 Da        Isoelectric Point: 8.7802

>NTDB_id=98177 ABXS88_RS08155 WP_353674678.1 1730651..1731778(+) (recF) [Synechocystis sp. LKSZ1]
MHLKSLHLRAFRNYSEQQLEFQAPKTILVGDNAQGKSNLLEAVELLASLKSHRTFRDRDLVLEGATSAMITAQLDRRYGP
AEMRLRLPVTGRRSYQVNQETVRRQADFLGVLNAVQFSCLDLELVRGGPDSRRQWLDTLLIQLEPLYAHILAQYQQVLKQ
RNSLLKQSRQGQVIDPVALALWDQQLAEFGTHISRRRARALTRLLPLAQDWHQRISGHQENLEINYQPNVPWQSDDPATI
QQAFLAKFSQRRIAEQQLGTSVVGPHRDEIVLTINQTPAKAYGSQGQQRTLVLSLKLAELHLLETIIGEPPLLLLDDVLA
ELDLHRQGQLLAAIEDRFQTLITTTHLNRFEPHWLRSAEIYQVQQGQLTPLELAR

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=98177 ABXS88_RS08155 WP_353674678.1 1730651..1731778(+) (recF) [Synechocystis sp. LKSZ1]
ATGCACCTGAAATCTCTCCACCTCCGCGCCTTCCGCAACTACTCCGAACAACAGCTTGAGTTTCAGGCCCCGAAAACCAT
TTTGGTGGGGGATAACGCCCAGGGAAAATCGAACCTCCTGGAAGCAGTGGAACTCTTGGCCTCCCTCAAAAGTCATCGCA
CCTTCCGCGACCGAGACCTCGTCCTAGAGGGCGCAACCAGCGCCATGATCACGGCGCAATTAGACCGTCGTTATGGCCCA
GCGGAAATGAGATTACGCTTACCCGTTACCGGCCGTCGGAGTTACCAAGTCAATCAGGAAACCGTGCGCCGTCAGGCCGA
TTTTTTGGGGGTGCTCAATGCGGTGCAATTTTCTTGCTTGGATTTGGAGCTGGTACGGGGCGGGCCGGATAGTCGCCGTC
AATGGCTGGATACCTTGCTCATTCAACTCGAACCCCTCTACGCCCATATTCTTGCCCAGTACCAACAGGTACTTAAACAG
CGCAATTCCCTCCTCAAGCAGTCCCGTCAGGGCCAGGTTATTGATCCGGTGGCATTAGCACTATGGGATCAACAACTGGC
GGAATTTGGAACCCATATCAGTCGCCGCCGGGCCAGGGCCCTAACCCGTTTACTCCCCTTGGCCCAGGATTGGCACCAAC
GCATTAGTGGCCATCAGGAAAACTTGGAAATTAACTACCAACCCAACGTTCCTTGGCAGTCGGACGACCCTGCGACTATT
CAACAGGCCTTTTTAGCCAAATTTAGCCAGCGGCGCATCGCTGAACAACAATTAGGAACCTCTGTGGTCGGGCCCCACCG
GGACGAAATCGTATTAACCATCAATCAAACTCCTGCCAAGGCCTACGGCTCCCAGGGCCAACAACGAACTTTGGTCTTGT
CTCTCAAGCTGGCAGAATTACACCTACTGGAAACTATCATTGGGGAACCGCCCTTGCTCCTGTTGGATGACGTATTGGCG
GAATTAGACCTGCATCGGCAAGGCCAATTATTGGCGGCCATTGAAGACCGTTTTCAAACCCTGATTACCACCACTCATCT
CAATCGCTTTGAACCCCATTGGTTGAGGTCAGCAGAGATCTATCAAGTCCAGCAGGGCCAGTTAACACCCCTGGAATTGG
CTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

38.005

98.933

0.376
  recF Streptococcus pneumoniae R6

37.297

98.667

0.368

Multiple sequence alignment