Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYE22_RS16605 Genome accession   NZ_CP151946
Coordinates   3101581..3102159 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3096581..3107159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS16570 (NYE22_16570) lepB 3096586..3097092 (-) 507 WP_003233128.1 signal peptidase I -
  NYE22_RS16575 (NYE22_16575) - 3097094..3097717 (-) 624 WP_161985897.1 TVP38/TMEM64 family protein -
  NYE22_RS16580 (NYE22_16580) - 3097869..3098240 (+) 372 WP_161985896.1 carboxylesterase family protein -
  NYE22_RS16585 (NYE22_16585) - 3098439..3098639 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NYE22_RS16590 (NYE22_16590) - 3098636..3100105 (+) 1470 WP_160244072.1 sodium:solute symporter -
  NYE22_RS16595 (NYE22_16595) - 3100149..3100418 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  NYE22_RS16600 (NYE22_16600) - 3100635..3101534 (+) 900 WP_041851019.1 SDR family oxidoreductase -
  NYE22_RS16605 (NYE22_16605) comK 3101581..3102159 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NYE22_RS16610 (NYE22_16610) - 3102452..3102685 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  NYE22_RS16615 (NYE22_16615) - 3102713..3103570 (-) 858 WP_172861555.1 SDR family oxidoreductase -
  NYE22_RS16620 (NYE22_16620) - 3103682..3105211 (+) 1530 WP_163135586.1 FAD-dependent oxidoreductase -
  NYE22_RS16625 (NYE22_16625) hemAT 3105349..3106647 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=981741 NYE22_RS16605 WP_029317573.1 3101581..3102159(-) (comK) [Bacillus sp. FSL K6-1560]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=981741 NYE22_RS16605 WP_029317573.1 3101581..3102159(-) (comK) [Bacillus sp. FSL K6-1560]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATTTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment