Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE22_RS05145 Genome accession   NZ_CP151946
Coordinates   963802..964446 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 958802..969446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS05115 (NYE22_05115) - 959224..959592 (-) 369 WP_017695529.1 hypothetical protein -
  NYE22_RS05120 (NYE22_05120) - 959771..959833 (-) 63 Protein_992 hypothetical protein -
  NYE22_RS05125 (NYE22_05125) degQ 960055..960195 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYE22_RS05130 (NYE22_05130) - 960380..961240 (+) 861 WP_342412363.1 polyprenyl synthetase family protein -
  NYE22_RS05135 (NYE22_05135) comX 961255..961416 (+) 162 WP_003241045.1 competence pheromone ComX -
  NYE22_RS05140 (NYE22_05140) comP 961424..963721 (+) 2298 WP_033884760.1 histidine kinase Regulator
  NYE22_RS05145 (NYE22_05145) comA 963802..964446 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYE22_RS05150 (NYE22_05150) - 964465..964845 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  NYE22_RS05155 (NYE22_05155) mnhG 964884..965258 (-) 375 WP_161986412.1 monovalent cation/H(+) antiporter subunit G -
  NYE22_RS05160 (NYE22_05160) - 965242..965526 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYE22_RS05165 (NYE22_05165) - 965526..966002 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NYE22_RS05170 (NYE22_05170) - 966008..967489 (-) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  NYE22_RS05175 (NYE22_05175) - 967482..967823 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYE22_RS05180 (NYE22_05180) - 967823..968254 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=981697 NYE22_RS05145 WP_003220716.1 963802..964446(+) (comA) [Bacillus sp. FSL K6-1560]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=981697 NYE22_RS05145 WP_003220716.1 963802..964446(+) (comA) [Bacillus sp. FSL K6-1560]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment