Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE22_RS02770 Genome accession   NZ_CP151946
Coordinates   514842..515564 (+) Length   240 a.a.
NCBI ID   WP_305090688.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509842..520564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS02745 (NYE22_02745) degS 510153..511310 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE22_RS02750 (NYE22_02750) degU 511393..512082 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE22_RS02755 (NYE22_02755) - 512180..513025 (+) 846 WP_003227986.1 DegV family protein -
  NYE22_RS02760 (NYE22_02760) comFA 513131..514522 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NYE22_RS02765 (NYE22_02765) comFB 514582..514878 (+) 297 WP_116315796.1 late competence protein ComFB -
  NYE22_RS02770 (NYE22_02770) comFC 514842..515564 (+) 723 WP_305090688.1 comF operon protein ComFC Machinery gene
  NYE22_RS02775 (NYE22_02775) - 515638..516057 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYE22_RS02780 (NYE22_02780) flgM 516138..516404 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE22_RS02785 (NYE22_02785) flgN 516420..516902 (+) 483 WP_014481048.1 flagellar protein FlgN -
  NYE22_RS02790 (NYE22_02790) flgK 516921..518444 (+) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  NYE22_RS02795 (NYE22_02795) flgL 518455..519351 (+) 897 WP_101501515.1 flagellar hook-associated protein FlgL -
  NYE22_RS02800 (NYE22_02800) - 519398..519973 (+) 576 WP_283933815.1 DUF6470 family protein -
  NYE22_RS02805 (NYE22_02805) fliW 519994..520425 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27545.81 Da        Isoelectric Point: 9.1353

>NTDB_id=981692 NYE22_RS02770 WP_305090688.1 514842..515564(+) (comFC) [Bacillus sp. FSL K6-1560]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=981692 NYE22_RS02770 WP_305090688.1 514842..515564(+) (comFC) [Bacillus sp. FSL K6-1560]
ATGTCACACGAAGCAGGAGGAGGTATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment