Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE22_RS02750 Genome accession   NZ_CP151946
Coordinates   511393..512082 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-1560     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 506393..517082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS02730 (NYE22_02730) - 506961..508037 (+) 1077 WP_032726968.1 MraY family glycosyltransferase -
  NYE22_RS02735 (NYE22_02735) tagV 508108..509283 (-) 1176 WP_161986328.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYE22_RS02740 (NYE22_02740) - 509283..509936 (-) 654 WP_003227979.1 YigZ family protein -
  NYE22_RS02745 (NYE22_02745) degS 510153..511310 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYE22_RS02750 (NYE22_02750) degU 511393..512082 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE22_RS02755 (NYE22_02755) - 512180..513025 (+) 846 WP_003227986.1 DegV family protein -
  NYE22_RS02760 (NYE22_02760) comFA 513131..514522 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NYE22_RS02765 (NYE22_02765) comFB 514582..514878 (+) 297 WP_116315796.1 late competence protein ComFB -
  NYE22_RS02770 (NYE22_02770) comFC 514842..515564 (+) 723 WP_305090688.1 comF operon protein ComFC Machinery gene
  NYE22_RS02775 (NYE22_02775) - 515638..516057 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYE22_RS02780 (NYE22_02780) flgM 516138..516404 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE22_RS02785 (NYE22_02785) flgN 516420..516902 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=981690 NYE22_RS02750 WP_003219701.1 511393..512082(+) (degU) [Bacillus sp. FSL K6-1560]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=981690 NYE22_RS02750 WP_003219701.1 511393..512082(+) (degU) [Bacillus sp. FSL K6-1560]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment