Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE38_RS17440 Genome accession   NZ_CP151944
Coordinates   3477318..3478703 (-) Length   461 a.a.
NCBI ID   WP_017418815.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472318..3483703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS17405 (NYE38_17405) flgL 3472493..3473410 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NYE38_RS17410 (NYE38_17410) flgK 3473422..3474939 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  NYE38_RS17415 (NYE38_17415) - 3474955..3475437 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYE38_RS17420 (NYE38_17420) flgM 3475452..3475718 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE38_RS17425 (NYE38_17425) - 3475788..3476207 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  NYE38_RS17430 (NYE38_17430) comFC 3476281..3476970 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  NYE38_RS17435 (NYE38_17435) - 3476976..3477260 (-) 285 WP_017418816.1 competence protein ComFB -
  NYE38_RS17440 (NYE38_17440) comFA 3477318..3478703 (-) 1386 WP_017418815.1 DEAD/DEAH box helicase Machinery gene
  NYE38_RS17445 (NYE38_17445) - 3478811..3479659 (-) 849 WP_237586810.1 DegV family protein -
  NYE38_RS17450 (NYE38_17450) degU 3479757..3480446 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE38_RS17455 (NYE38_17455) degS 3480523..3481686 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE38_RS17460 (NYE38_17460) - 3481909..3482556 (+) 648 WP_340801881.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52610.07 Da        Isoelectric Point: 10.2278

>NTDB_id=981628 NYE38_RS17440 WP_017418815.1 3477318..3478703(-) (comFA) [Bacillus sp. EU63]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQIPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=981628 NYE38_RS17440 WP_017418815.1 3477318..3478703(-) (comFA) [Bacillus sp. EU63]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGTCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAATCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment