Detailed information NTG0098158

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ABXS88_RS01580
• Genome accession: NZ_AP031572
• Coordinates: 324044..326731 (+)
• Length: 895 a.a.
• NCBI ID: WP_353673452.1
• Uniprot ID: -
• Organism: Synechocystis sp. LKSZ1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 319044..331731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXS88_RS01560 (OLK001_02990)	-	320281..320631 (+)	351	WP_353673449.1	hypothetical protein	-
ABXS88_RS01565 (OLK001_03000)	recR	320741..321349 (+)	609	WP_353674855.1	recombination mediator RecR	Machinery gene
ABXS88_RS01570 (OLK001_03010)	-	321354..322478 (+)	1125	WP_353673450.1	beta-ketoacyl-ACP synthase	-
ABXS88_RS01575 (OLK001_03020)	-	322512..323969 (+)	1458	WP_353673451.1	RecQ family ATP-dependent DNA helicase	-
ABXS88_RS01580 (OLK001_03030)	clpC	324044..326731 (+)	2688	WP_353673452.1	ATP-dependent chaperone ClpB	Regulator
ABXS88_RS01585 (OLK001_03040)	-	327050..328270 (+)	1221	WP_353673453.1	response regulator	-
ABXS88_RS01590 (OLK001_03050)	pilH	328396..328761 (+)	366	WP_353673454.1	response regulator	Machinery gene
ABXS88_RS01595 (OLK001_03060)	-	328933..329463 (+)	531	WP_353673455.1	chemotaxis protein CheW	-

Sequence

Protein

• Length: 895 a.a.
• Molecular weight: 101689.13 Da
• Isoelectric Point: 5.0758

>NTDB_id=98158 ABXS88_RS01580 WP_353673452.1 324044..326731(+) (clpC) [Synechocystis sp. LKSZ1]
MQPTDPSKFTEQAWDAIVKSQEVARRFKNTNLEVEHLVIALLEQDKGLAGRIFQKANLDALALQQQLENFTYRQPKQSYV
EQLYLGRSLDLMLDRAETARESWEDKFISVEHLLVGFAEDDRIGRTSLRKFNLDPQDLELAIKAIRGTQKVTEQNQEERY
EALEKYGRDLTEQARQGKLDPVIGRDEEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPESLKNRQLI
SLDMGSLIAGAKYRGEFEERLRSVMKEVTHSDGQIILFIDEVHTVVGAGGREGSGSMDAGNLLKPMLARGELRCIGATTL
DEYRKHIEKDPALERRFQQVYVKQPSVEDTISILRGLKEKYEVHHGVKITDSALVAAATLSHRYIQDRFLPDKAIDLVDE
AAARLKMEITSKPVELEVIDRRLMQLQMEKLSLEGEEKRPGFIVVDKASKERLEKIQQEILDLESQQQSLSGQWLAEKQM
LEEINALKEEEEQIRRQVEQAERDYDLNKAAQLKYGRLEVLQHDIEEKESKLLEIQASEKTLLREQVTEADIAEIVAGWT
GIPINRLLETERQKLLQLESHLHQKVIGQTEAVAAVAAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAGFLFD
SEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQG
RVVDFRNTIIVMTSNIGSDHILNFSADDRDYDKMQKQVLQALRQHFRPEFLNRIDDLIIFHTLQRAELRQIVQLQIKRIE
KLLEEQKIKLVISDSALDYIVAAGYDPVYGARPLKRAIQRELENPMATKILENTFGPEDTILIDCVGNQLLFTKQEKVQA
VEDDIPLVEVEVIVS

Nucleotide

• Length: 2688 bp

>NTDB_id=98158 ABXS88_RS01580 WP_353673452.1 324044..326731(+) (clpC) [Synechocystis sp. LKSZ1]
ATGCAACCAACCGATCCAAGTAAGTTTACTGAACAGGCCTGGGATGCCATCGTTAAATCCCAGGAAGTCGCCCGTCGTTT
CAAAAATACCAATCTAGAAGTTGAACACTTGGTGATTGCATTACTGGAGCAGGACAAAGGCCTGGCGGGTCGCATTTTCC
AAAAAGCCAATCTCGATGCCCTGGCCCTCCAACAACAACTGGAAAATTTCACTTACCGCCAGCCGAAACAATCCTACGTT
GAGCAACTTTATCTGGGCCGGAGTTTAGATCTGATGCTTGACCGCGCCGAAACGGCCCGCGAAAGCTGGGAGGATAAATT
TATTTCCGTCGAACACCTGCTGGTGGGCTTTGCCGAAGATGACCGCATTGGTCGCACCAGTCTACGCAAGTTTAACCTTG
ATCCCCAGGATCTAGAGTTGGCGATCAAGGCCATTCGGGGAACGCAGAAAGTCACAGAACAAAACCAGGAAGAGCGCTAC
GAGGCCCTGGAAAAATATGGTCGGGATCTAACTGAACAGGCCCGTCAAGGCAAACTCGACCCCGTCATTGGTCGGGATGA
AGAAATCCGCCGCGTCATTCAAGTCCTGTCCCGCCGCTCCAAAAATAATCCCGTTTTAATTGGGGAACCGGGGGTCGGCA
AAACCGCCATTGCCGAGGGCCTGGCCCAACGCATTATTAATGGAGATGTGCCGGAATCCTTGAAAAATCGGCAGTTAATC
TCCTTGGATATGGGCAGTCTGATCGCCGGGGCCAAGTACCGGGGAGAATTTGAGGAACGGTTACGCTCGGTGATGAAGGA
AGTGACTCATTCCGACGGCCAAATTATTTTATTTATCGATGAAGTGCATACGGTGGTCGGGGCCGGGGGCCGGGAAGGTT
CTGGTTCCATGGATGCTGGTAATTTACTCAAACCGATGCTAGCCCGAGGGGAATTGCGCTGTATCGGGGCCACGACCTTG
GATGAATACCGCAAACATATCGAGAAAGATCCGGCCCTGGAGCGACGCTTCCAACAGGTTTACGTTAAACAGCCGAGTGT
GGAGGATACCATTTCCATCCTGCGGGGCCTGAAGGAAAAATACGAAGTCCACCACGGTGTTAAAATCACCGATTCGGCCC
TGGTAGCCGCCGCCACACTCTCCCATCGCTACATCCAAGACCGCTTTTTACCCGATAAGGCTATTGATCTCGTCGATGAA
GCCGCTGCCCGTTTAAAAATGGAAATCACCTCCAAGCCGGTGGAATTAGAAGTGATCGACCGTCGTTTAATGCAGTTACA
AATGGAAAAATTGTCTCTGGAGGGAGAAGAAAAACGGCCCGGATTTATCGTAGTCGATAAGGCCTCCAAGGAACGCCTCG
AAAAAATTCAGCAGGAAATCCTAGACCTGGAAAGTCAGCAACAGTCCCTTTCCGGTCAGTGGCTAGCGGAAAAACAAATG
CTAGAGGAAATTAATGCCCTCAAAGAAGAAGAGGAACAAATTCGTCGCCAAGTGGAACAAGCCGAGCGGGATTATGATCT
GAATAAAGCCGCCCAACTCAAATACGGCCGCCTGGAAGTACTTCAGCACGACATCGAAGAAAAAGAAAGCAAACTGTTAG
AAATCCAGGCCTCGGAAAAAACCCTTTTACGGGAGCAAGTCACCGAAGCCGATATTGCCGAAATTGTGGCCGGCTGGACG
GGCATTCCCATCAACCGCCTCTTGGAAACGGAACGCCAAAAACTCCTGCAATTGGAAAGTCATCTCCACCAAAAAGTAAT
TGGCCAAACAGAAGCTGTGGCCGCCGTGGCCGCTGCCATTCGTCGGGCCCGGGCCGGCATGAAAGACCCCAGTCGTCCCA
TTGGTTCTTTTCTGTTTATGGGGCCAACGGGAGTCGGAAAAACCGAATTGGCCCGGGCCTTGGCTGGTTTTCTCTTCGAC
AGTGAAGAGGCCATGGTACGGATTGATATGTCCGAATATATGGAAAAACACGCCGTTTCTCGCTTGATTGGGGCGCCTCC
TGGTTATGTGGGTTACGAAGAAGGGGGCCAACTGTCAGAGGCGGTGCGTCGTCGGCCCTATTCCGTTGTCTTGTTAGATG
AAGTGGAAAAGGCCCATTTGGATGTTTTTAACATTCTTCTCCAGGTACTAGACGATGGCCGCATTACCGATTCCCAGGGC
CGAGTGGTGGATTTCCGCAATACGATCATTGTCATGACCAGTAATATTGGCAGTGACCATATTTTAAATTTCTCGGCGGA
TGATCGGGATTACGACAAAATGCAAAAACAGGTTTTACAGGCCCTGCGTCAGCATTTTCGTCCCGAATTTTTAAACCGCA
TTGATGACCTAATTATTTTCCATACCCTGCAACGGGCTGAACTCCGACAAATCGTGCAATTGCAAATTAAACGCATTGAA
AAACTGTTGGAGGAGCAGAAAATTAAACTGGTAATCTCAGATTCTGCTTTAGACTATATTGTGGCGGCCGGCTATGATCC
GGTGTACGGAGCCCGGCCCTTGAAGCGAGCCATTCAGCGGGAATTAGAAAACCCTATGGCTACCAAAATCCTAGAAAATA
CCTTTGGCCCTGAGGATACCATTTTGATTGATTGCGTCGGCAATCAGTTACTTTTTACTAAACAAGAAAAGGTGCAGGCG
GTTGAGGATGATATTCCTCTCGTTGAAGTTGAGGTCATCGTGTCTTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (346-452)

• AAA domain (Cdc48 subfamily) (AAA_2) (612-776)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-147)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (21-70)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-340)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (783-862)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.195	97.654	0.441
clpC	Lactococcus lactis subsp. cremoris KW2	44.186	81.676	0.361