Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABXS88_RS01565 Genome accession   NZ_AP031572
Coordinates   320741..321349 (+) Length   202 a.a.
NCBI ID   WP_353674855.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315741..326349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS01550 (OLK001_02970) - 316800..318407 (+) 1608 WP_353673447.1 helix-turn-helix domain-containing protein -
  ABXS88_RS01555 (OLK001_02980) - 318738..320129 (-) 1392 WP_353673448.1 hypothetical protein -
  ABXS88_RS01560 (OLK001_02990) - 320281..320631 (+) 351 WP_353673449.1 hypothetical protein -
  ABXS88_RS01565 (OLK001_03000) recR 320741..321349 (+) 609 WP_353674855.1 recombination mediator RecR Machinery gene
  ABXS88_RS01570 (OLK001_03010) - 321354..322478 (+) 1125 WP_353673450.1 beta-ketoacyl-ACP synthase -
  ABXS88_RS01575 (OLK001_03020) - 322512..323969 (+) 1458 WP_353673451.1 RecQ family ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22133.78 Da        Isoelectric Point: 7.6669

>NTDB_id=98157 ABXS88_RS01565 WP_353674855.1 320741..321349(+) (recR) [Synechocystis sp. LKSZ1]
MRVTVIYTPPLARLIEQLQRLPSIGPKTAQRLALHILKRPEAEVQLLAQALIEAKQKVGLCQTCFHLSAESMCEICRNPH
RQSDTLCVVADSRDVIALEKTREYGGKYHVLGGVISPLDGIGPEQLTVQALVQRVNQGTIKEVILALSPSVEGETTTLYV
GKLLQPFTKVTRIAFGLPVGGDLEYADEVTLARALEGRRELG

Nucleotide


Download         Length: 609 bp        

>NTDB_id=98157 ABXS88_RS01565 WP_353674855.1 320741..321349(+) (recR) [Synechocystis sp. LKSZ1]
CTGAGAGTTACTGTTATTTATACCCCTCCCCTAGCTCGTTTAATTGAGCAATTGCAACGTCTTCCCAGCATCGGGCCAAA
AACGGCCCAACGACTGGCCCTACATATCCTCAAACGGCCTGAGGCAGAAGTTCAGTTATTAGCCCAGGCTCTGATTGAAG
CGAAGCAAAAAGTTGGCCTCTGCCAGACCTGTTTTCATCTTTCCGCCGAGTCGATGTGTGAAATTTGCCGCAATCCCCAT
CGCCAGAGTGATACCCTCTGTGTCGTAGCCGATTCGCGGGATGTGATCGCGCTAGAAAAAACGCGGGAGTATGGCGGCAA
GTACCATGTTCTGGGAGGCGTGATTTCTCCCCTAGATGGCATTGGCCCAGAACAGTTGACAGTTCAGGCGTTGGTTCAGC
GAGTGAATCAAGGCACGATTAAAGAAGTGATCCTGGCCCTGAGTCCTAGCGTGGAAGGGGAAACCACCACCCTCTACGTC
GGCAAACTGCTCCAACCCTTTACCAAAGTGACTCGCATTGCCTTTGGTTTACCCGTAGGGGGCGATCTGGAATACGCCGA
TGAAGTAACCCTAGCCAGGGCCTTGGAAGGACGACGGGAATTGGGTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(43-81)

Toprim domain (Toprim_4)

(84-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

51.531

97.03

0.5
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.031

96.04

0.49
  recR Streptococcus pneumoniae R6

44.444

98.02

0.436

Multiple sequence alignment