Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACNM7T_RS08860 Genome accession   NZ_CP183041
Coordinates   1743078..1743509 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain Scm     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738078..1748509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS08840 (ACNM7T_08840) spoVS 1738648..1738908 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACNM7T_RS08845 (ACNM7T_08845) tdh 1739166..1740212 (+) 1047 WP_032866039.1 L-threonine 3-dehydrogenase -
  ACNM7T_RS08850 (ACNM7T_08850) - 1740225..1741403 (+) 1179 WP_136396372.1 glycine C-acetyltransferase -
  ACNM7T_RS08855 (ACNM7T_08855) miaB 1741546..1743075 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACNM7T_RS08860 (ACNM7T_08860) ymcA 1743078..1743509 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACNM7T_RS08865 (ACNM7T_08865) cotE 1743762..1744307 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACNM7T_RS08870 (ACNM7T_08870) hexA 1744426..1747011 (+) 2586 WP_094031921.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=981567 ACNM7T_RS08860 WP_003154113.1 1743078..1743509(+) (ymcA) [Bacillus amyloliquefaciens strain Scm]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=981567 ACNM7T_RS08860 WP_003154113.1 1743078..1743509(+) (ymcA) [Bacillus amyloliquefaciens strain Scm]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916