Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NYE38_RS01750 Genome accession   NZ_CP151944
Coordinates   331897..332295 (-) Length   132 a.a.
NCBI ID   WP_017419379.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 326897..337295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS01725 (NYE38_01725) - 327069..328271 (+) 1203 WP_285001986.1 GTP-binding protein -
  NYE38_RS01730 (NYE38_01730) - 328336..329472 (+) 1137 WP_094296367.1 zinc-dependent alcohol dehydrogenase -
  NYE38_RS01735 (NYE38_01735) - 329487..329921 (+) 435 WP_285001985.1 RDD family protein -
  NYE38_RS01740 (NYE38_01740) - 329993..330316 (+) 324 WP_007409357.1 YckD family protein -
  NYE38_RS01745 (NYE38_01745) - 330420..331856 (+) 1437 WP_061861835.1 family 1 glycosylhydrolase -
  NYE38_RS01750 (NYE38_01750) nin/comJ 331897..332295 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  NYE38_RS01755 (NYE38_01755) nucA/comI 332316..332753 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE38_RS01760 (NYE38_01760) hxlB 333084..333641 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  NYE38_RS01765 (NYE38_01765) hxlA 333638..334273 (-) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  NYE38_RS01770 (NYE38_01770) - 334505..334867 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=981568 NYE38_RS01750 WP_017419379.1 331897..332295(-) (nin/comJ) [Bacillus sp. EU63]
MIKSWKPQELAISYHQFTLFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=981568 NYE38_RS01750 WP_017419379.1 331897..332295(-) (nin/comJ) [Bacillus sp. EU63]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACACTCTTTCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment