Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ACNM7T_RS06000 Genome accession   NZ_CP183041
Coordinates   1159728..1160888 (+) Length   386 a.a.
NCBI ID   WP_069006905.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1154728..1165888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS05975 (ACNM7T_05975) - 1155474..1156661 (+) 1188 WP_015239569.1 putative glycoside hydrolase -
  ACNM7T_RS05980 (ACNM7T_05980) - 1156779..1157357 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  ACNM7T_RS05985 (ACNM7T_05985) spx 1157536..1157931 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  ACNM7T_RS05990 (ACNM7T_05990) - 1157989..1158645 (-) 657 WP_015239570.1 TerC family protein -
  ACNM7T_RS05995 (ACNM7T_05995) mecA 1158921..1159577 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  ACNM7T_RS06000 (ACNM7T_06000) coiA 1159728..1160888 (+) 1161 WP_069006905.1 competence protein CoiA family protein Machinery gene
  ACNM7T_RS06005 (ACNM7T_06005) pepF 1161116..1162945 (+) 1830 WP_094031915.1 oligoendopeptidase F Regulator
  ACNM7T_RS06010 (ACNM7T_06010) - 1162983..1163150 (-) 168 WP_003155026.1 hypothetical protein -
  ACNM7T_RS06015 (ACNM7T_06015) spxH 1163436..1164338 (-) 903 WP_032874464.1 protease adaptor protein SpxH -
  ACNM7T_RS06020 (ACNM7T_06020) - 1164335..1164733 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  ACNM7T_RS06025 (ACNM7T_06025) - 1164962..1165648 (-) 687 WP_007409105.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44582.44 Da        Isoelectric Point: 10.0518

>NTDB_id=981544 ACNM7T_RS06000 WP_069006905.1 1159728..1160888(+) (coiA) [Bacillus amyloliquefaciens strain Scm]
MFSAVTADGRLIQLAGSYSKEKAAELRKKRWFCPVCESELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSVGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVHSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTTIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQSHLYLRLAELSKKGAPIRLTGMVHDLRQKI
RRKEIRMRYGSQDSLIRMAVKQYADFLCLQDFLREIENEVYMPSSQRKLPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=981544 ACNM7T_RS06000 WP_069006905.1 1159728..1160888(+) (coiA) [Bacillus amyloliquefaciens strain Scm]
ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCGAAAGTGAACTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCAGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGCGTCAGCCTGGAACCGTATCTGACTTCCGTTGGACAGCGGCCTGACTTGACGGCGGA
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACAGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCCATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCACAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGAAAC
AAAAGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTCTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGAGCCATTTAT
ACTTGCGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTAACCGGCATGGTTCATGATTTGCGGCAAAAAATC
AGGCGTAAGGAGATCCGGATGCGGTATGGTTCACAAGATAGCCTTATCAGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

45.745

97.409

0.446