Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACNR0F_RS01495 Genome accession   NZ_CP183037
Coordinates   278322..281978 (+) Length   1218 a.a.
NCBI ID   WP_418604998.1    Uniprot ID   -
Organism   Kingella kingae strain URMC_2412A945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 273322..286978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR0F_RS01475 (ACNR0F_01475) - 274320..274523 (-) 204 WP_003785524.1 cold-shock protein -
  ACNR0F_RS01480 (ACNR0F_01480) clpS 274708..275010 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -
  ACNR0F_RS01485 (ACNR0F_01485) clpC 275007..277280 (+) 2274 WP_038311129.1 ATP-dependent Clp protease ATP-binding subunit ClpA Regulator
  ACNR0F_RS01490 (ACNR0F_01490) - 277407..278312 (+) 906 WP_003789547.1 hypothetical protein -
  ACNR0F_RS01495 (ACNR0F_01495) recB 278322..281978 (+) 3657 WP_418604998.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACNR0F_RS01500 (ACNR0F_01500) - 282132..282320 (+) 189 WP_003789551.1 hypothetical protein -
  ACNR0F_RS01505 (ACNR0F_01505) orn 282330..282878 (+) 549 WP_003789552.1 oligoribonuclease -
  ACNR0F_RS01510 (ACNR0F_01510) - 283022..283894 (+) 873 WP_038306893.1 YicC/YloC family endoribonuclease -
  ACNR0F_RS01515 (ACNR0F_01515) pheA 284332..285408 (+) 1077 WP_038311124.1 prephenate dehydratase -
  ACNR0F_RS01520 (ACNR0F_01520) metW 285473..286054 (-) 582 WP_003789557.1 methionine biosynthesis protein MetW -
  ACNR0F_RS01525 (ACNR0F_01525) - 286051..286383 (-) 333 WP_038311122.1 LYR motif-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138020.95 Da        Isoelectric Point: 6.0239

>NTDB_id=981448 ACNR0F_RS01495 WP_418604998.1 278322..281978(+) (recB) [Kingella kingae strain URMC_2412A945]
MSHDFTPLNVPLVATNLIEASAGTGKTWNISALFARLVLLEQMSVDKILVVTFTNAATAELKTRLRDRLGEALHVLHKMQ
APFGATEVQAACEQYAPKSADFMSKLVEQALQKESRERLMMRLKAALSQFDHAAIYTIHSFCQRVLQDFAFYCQVPFQIE
LDEDSTPSPIAAQDFWREQVAHHEQLAQIVYRHQKNPQQQAAALASFVGRTYLHTCPTAYTLRDWQAANEGFVRAWQDTA
NQLDAIESAWEKLQPSLPKNSYQPDDLKSYIQQCHDWKSAGCLPDVNIILKLFFNSKNENKFSLDTLTDKAKKDFKGKQD
PDALDCLSRTWGEWANHAQILSASEGDVLINVAMDLLHAIRQQNEADKQKQPARQFDDLLLDVFNALQTNRTHATALAQA
MSRTWQVVLIDEFQDTDPLQYGIFSRAFMQSSLHTENAPTVFMVGDPKQAIYNFRGADIFAYLQAAENVSPEQRYTLRTN
FRSHARLVNSVGALFAKPQPFVLPNLAYETVQAHRSNSHLSPQEAAVRVRWLNDLSLDKTEKTDTLQHTSAQWCASEIAY
ALHRAGQGELRLKDKPLHAGDMAVLVRTRQEGAMVQRELKRLNVQSVLLSRDSVFQEDEARAVYALLAFFLNPQQTAHLV
YVLAGCLFGYTAQQLWALQQDERALSEWADEASVALQKWQKVGVYAAVQHFLQQHDVIQNLLAAGNDRTLTNLGQVLELL
AAEEESGRLPAALYQWLQQEIAATQDGDSNENRALRLESDEQLVKIVTMHASKGLQYPIVYCPFVWRGKGNKGDDWQVLQ
GESGSTLLHKNQMTDADKEQAQKERLSEDLRLLYVALTRAEEQLVLYLAAHENTHHHPFYYLLDGDAHKTWSGAKVPAHA
YRQIWQQFVQKQNAETTSFEWDETPQAALLWTQNGKSSLHIQSDSETVYQAQTVATRHYVPVVFSSFTALSSHQHAPEAL
ANTDEAERKWDIAVQAALPSETTSLPIQNDDIWDMAHFPRGAKAGVCLHELLEYFPFGQPAEKHSERIVRVLNRHQIADA
ENWLPAVCDMLDKVRQTPLVNGIRLCDLSRQEWLNEMAFLFEIEQFNLVDVQNWCKQMNLSPECVQAALSLTFRQLSGFL
NGFIDTLVYTQNQALVIDYKSNYLADYSPASLNPEIAKHHYYLQALIYAIATARYLRSRQCCPDVIAVRYVFLRGVDGSS
QQGVWACDVPVASLAMWL

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=981448 ACNR0F_RS01495 WP_418604998.1 278322..281978(+) (recB) [Kingella kingae strain URMC_2412A945]
ATGAGCCACGATTTCACGCCCCTAAACGTTCCCCTTGTTGCCACCAATTTGATTGAAGCCAGCGCAGGTACAGGCAAAAC
ATGGAATATTTCCGCCTTGTTTGCCCGATTGGTGCTGCTGGAACAAATGTCTGTGGACAAAATTTTGGTCGTTACGTTTA
CCAACGCCGCCACCGCCGAACTCAAAACCCGATTGCGCGACCGTTTGGGCGAAGCCTTGCACGTGTTGCACAAAATGCAA
GCTCCGTTTGGCGCAACCGAAGTGCAGGCTGCTTGCGAACAATACGCGCCCAAATCGGCAGATTTCATGAGCAAATTGGT
GGAACAAGCCCTGCAAAAAGAATCGCGCGAACGCTTAATGATGCGACTCAAAGCCGCGTTGAGCCAGTTTGACCACGCCG
CCATTTACACCATTCACAGCTTTTGTCAGCGCGTGTTGCAAGATTTCGCGTTTTATTGCCAAGTCCCTTTTCAAATTGAA
TTGGACGAAGACAGCACGCCCAGCCCGATTGCGGCGCAAGACTTTTGGCGCGAACAAGTGGCGCACCACGAACAACTGGC
GCAGATTGTGTATCGCCATCAAAAAAATCCACAGCAACAAGCCGCAGCATTGGCTTCGTTTGTGGGGCGAACTTATTTGC
ACACGTGCCCCACGGCATACACTTTGCGCGATTGGCAAGCAGCAAACGAAGGTTTTGTACGCGCATGGCAAGACACGGCA
AATCAGCTTGATGCGATTGAAAGCGCGTGGGAAAAATTGCAACCGAGTTTGCCCAAAAATAGCTATCAGCCCGATGATTT
AAAAAGCTATATCCAACAATGCCATGACTGGAAAAGTGCAGGCTGCTTGCCCGATGTAAACATTATTTTGAAGCTGTTTT
TTAATAGCAAAAACGAAAACAAATTCAGCCTTGACACGCTAACCGACAAAGCCAAAAAAGACTTCAAAGGCAAACAAGAC
CCTGATGCTTTGGACTGTTTAAGCCGCACTTGGGGCGAATGGGCAAACCACGCACAAATCTTGTCAGCCAGCGAAGGTGA
TGTGTTGATTAACGTGGCAATGGATTTGCTCCACGCTATTCGCCAGCAAAACGAAGCCGACAAACAAAAGCAGCCTGCAC
GTCAATTTGACGATTTATTACTAGACGTGTTCAACGCGCTGCAAACCAATCGCACCCATGCCACCGCGTTGGCACAAGCC
ATGTCGCGCACTTGGCAAGTGGTGCTGATTGACGAATTTCAAGACACCGACCCGTTGCAATATGGCATTTTTTCTCGCGC
CTTTATGCAAAGCAGCCTGCACACAGAAAACGCGCCCACCGTGTTTATGGTTGGCGACCCAAAACAGGCAATTTACAATT
TTCGTGGCGCGGACATTTTTGCCTATTTGCAAGCCGCAGAAAACGTGTCGCCCGAACAACGCTACACTTTGCGTACCAAT
TTCCGCAGCCATGCGCGATTGGTCAACAGCGTGGGTGCATTGTTCGCCAAACCGCAACCGTTTGTGTTGCCCAATTTGGC
ATACGAAACCGTGCAAGCGCATCGATCAAACAGCCATTTGTCGCCCCAAGAAGCGGCGGTGCGCGTGCGTTGGCTCAACG
ATTTAAGTTTGGATAAAACCGAAAAAACCGATACCTTGCAACACACGTCCGCCCAATGGTGCGCCAGTGAAATTGCCTAT
GCCTTGCATCGCGCAGGGCAGGGCGAATTGCGTTTAAAAGACAAACCGCTACACGCTGGCGATATGGCTGTGCTGGTGCG
AACCCGCCAAGAAGGCGCAATGGTGCAGCGCGAACTCAAACGCCTAAATGTGCAAAGCGTGTTGTTGAGCCGTGATAGCG
TGTTCCAAGAAGACGAAGCGCGTGCCGTGTATGCTTTGTTGGCATTTTTCTTGAATCCGCAGCAAACGGCGCATTTGGTT
TATGTACTTGCAGGCTGCTTGTTTGGCTACACCGCGCAACAGTTGTGGGCTTTGCAACAAGATGAACGCGCATTAAGCGA
ATGGGCAGACGAAGCGAGCGTTGCCTTACAAAAATGGCAAAAAGTGGGCGTGTATGCAGCGGTGCAACATTTTTTGCAGC
AACACGATGTCATCCAAAATCTGCTCGCTGCTGGCAACGACCGCACTTTGACCAATTTGGGGCAAGTGCTGGAATTGCTG
GCTGCCGAAGAAGAAAGCGGACGTTTGCCAGCCGCCTTGTATCAATGGTTGCAACAAGAAATCGCTGCCACGCAAGATGG
CGACAGTAACGAAAACCGCGCCTTGCGACTGGAAAGCGATGAGCAACTGGTTAAAATTGTAACCATGCATGCATCAAAAG
GCTTGCAATATCCGATTGTGTATTGCCCGTTTGTGTGGCGTGGCAAAGGCAACAAGGGCGACGATTGGCAAGTGTTGCAA
GGCGAATCGGGCAGCACTTTGTTGCACAAAAACCAAATGACCGATGCCGACAAAGAACAAGCGCAAAAAGAGCGGTTGTC
GGAAGATTTGCGTTTGCTGTATGTGGCTTTGACTCGCGCCGAAGAGCAATTGGTGCTGTATTTGGCGGCACACGAAAACA
CGCATCATCACCCGTTTTATTATTTGTTAGACGGTGATGCGCACAAAACATGGTCTGGTGCAAAAGTGCCAGCGCACGCC
TATCGCCAAATTTGGCAACAATTCGTACAGAAGCAAAACGCAGAAACTACCAGCTTTGAATGGGACGAAACACCGCAGGC
TGCTTTGTTGTGGACGCAAAACGGCAAAAGCAGCCTGCACATTCAGTCGGATAGCGAAACGGTTTATCAAGCGCAAACCG
TTGCCACGCGCCATTATGTGCCAGTTGTGTTTAGCAGTTTTACCGCGTTGAGTTCGCATCAACACGCGCCTGAAGCGTTG
GCAAACACAGACGAAGCCGAGCGCAAATGGGACATTGCGGTGCAGGCTGCTTTACCCAGCGAAACGACATCGTTACCAAT
CCAAAACGATGATATTTGGGACATGGCGCACTTTCCGCGTGGCGCAAAAGCAGGCGTGTGTTTGCACGAATTGCTGGAAT
ATTTTCCGTTTGGTCAGCCAGCCGAAAAACACAGCGAGCGCATTGTGCGCGTGTTGAATCGCCATCAAATTGCCGATGCC
GAAAACTGGTTGCCAGCCGTGTGCGATATGCTAGACAAAGTGCGCCAAACACCGCTGGTAAACGGCATACGTTTGTGCGA
TTTGTCGCGCCAAGAGTGGCTTAACGAAATGGCATTTTTGTTTGAAATAGAACAATTTAATTTGGTTGATGTGCAAAACT
GGTGCAAGCAAATGAACTTGTCGCCCGAATGTGTGCAGGCTGCTTTGTCGCTCACGTTCCGCCAGTTAAGCGGTTTTTTG
AATGGCTTTATTGACACGCTGGTTTACACGCAAAATCAAGCGTTGGTGATTGACTACAAATCCAATTATTTGGCGGATTA
TTCGCCTGCGTCGCTGAATCCAGAAATCGCCAAGCATCACTATTATTTGCAAGCCTTGATTTATGCGATTGCTACGGCGC
GTTATCTTCGTAGCCGCCAATGTTGCCCCGATGTGATTGCGGTACGCTATGTGTTTTTACGCGGCGTGGACGGCAGCAGC
CAACAAGGCGTGTGGGCGTGTGATGTGCCTGTGGCTTCGTTGGCGATGTGGTTGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(475-847)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

43.25

100

0.439
  recB Neisseria gonorrhoeae strain FA1090

42.985

100

0.435
  recB Neisseria gonorrhoeae MS11

42.985

100

0.435