Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   AAFX31_RS22580 Genome accession   NZ_CP151941
Coordinates   3129633..3131681 (+) Length   682 a.a.
NCBI ID   WP_411061911.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124633..3136681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS22565 (AAFX31_22565) - 3125416..3126237 (+) 822 WP_061031526.1 TauD/TfdA dioxygenase family protein -
  AAFX31_RS22570 (AAFX31_22570) - 3126549..3128327 (+) 1779 WP_411061910.1 ABC-F family ATP-binding cassette domain-containing protein -
  AAFX31_RS22575 (AAFX31_22575) - 3128536..3129399 (+) 864 WP_061031524.1 GyrI-like domain-containing protein -
  AAFX31_RS22580 (AAFX31_22580) cqsS 3129633..3131681 (+) 2049 WP_411061911.1 response regulator Regulator
  AAFX31_RS22585 (AAFX31_22585) cqsA 3131833..3133014 (-) 1182 WP_411061912.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AAFX31_RS22590 (AAFX31_22590) - 3133259..3134647 (-) 1389 WP_411061913.1 PLP-dependent aminotransferase family protein -
  AAFX31_RS22595 (AAFX31_22595) - 3134752..3135666 (+) 915 WP_408742742.1 EamA family transporter -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78232.05 Da        Isoelectric Point: 5.2964

>NTDB_id=981429 AAFX31_RS22580 WP_411061911.1 3129633..3131681(+) (cqsS) [Vibrio chagasii strain TBV018]
MNAIRKVYQYAEPNLTLVGWMGFVGFPVYFVVWEYLFPQPYENLTLRLLCSVLFFGIIFRKHVPFEWRKYLPAYYQVAIT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGIATLCAWVAQGFYLEINMNWTHVPIFLFIY
LFGNLFYFRNQVEHENKVSLAKSFGAGIAHEMRNPLSGLLTSIDVIQSILPNPKSGDIKEPYALSVEELKQLRDVGDEAM
EIIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVIEDSIDSFNYKRAADKSAISLDVQNDFDFLGSDTLLKYVMYNLFK
NAFHHRSPEDFHIHVTMSSDDVTNQIVVTDNGSGISSDAIRRIFQDFYTTGKSGNYGLGLPFCQKVMRSFGGEIKCQSEV
EQWTQFTMTFPSLTSNSVNEIKSELRKLKSVLMVSDQTVLTKKMTEMSRFMGFDLTTLDVASALNNKEYQFEFDLVFVDM
ESLDLRVSSLDKLESLLSFTEARIVYLYEHHPVHRVRNVSFEPIWVETQVWLLNTKATIDRLLFDSNYVMPMLAAKPIEN
ANKRTIMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDSDDVDLILMDIEMPIMDGVEASRLIRSANKPYSSVP
IIAHTGDSSPVTLEKMESSGMSDFIMKPADKNRLFDKIAHWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=981429 AAFX31_RS22580 WP_411061911.1 3129633..3131681(+) (cqsS) [Vibrio chagasii strain TBV018]
ATGAACGCTATTCGTAAAGTTTATCAATATGCTGAACCGAATCTAACCCTCGTAGGTTGGATGGGCTTTGTCGGTTTCCC
TGTTTACTTTGTTGTGTGGGAGTATCTGTTCCCGCAGCCTTATGAAAATCTGACTCTCCGCCTATTATGCTCGGTGTTGT
TCTTCGGTATCATTTTCCGTAAACACGTTCCCTTCGAATGGCGAAAGTATCTACCTGCGTATTATCAAGTCGCGATTACG
CTCTGTCTGCCGTGTTTCTTCTTCTACATGTTGCTAATGAACAATTGGTCCAATGTTTGGGTCATGTCTTTCATGTCGGC
AATATTCCTTCATATTCTTTTGGTTCACGTCACAAGAGTGATGTTTGCACAAACCTTTGCCGGAATAGGGATTGCGACGT
TGTGTGCTTGGGTGGCACAAGGCTTCTATCTTGAGATAAACATGAACTGGACGCATGTGCCGATTTTCTTGTTTATCTAT
CTATTCGGTAACCTGTTCTATTTCCGCAATCAGGTGGAACACGAGAATAAGGTATCCCTGGCAAAATCTTTTGGTGCTGG
TATTGCACACGAAATGAGAAACCCTCTTAGTGGCTTGTTAACTTCTATTGATGTTATTCAATCGATACTGCCAAACCCAA
AGAGTGGGGACATCAAAGAGCCATATGCGCTAAGCGTCGAAGAGTTAAAACAGCTGCGTGACGTCGGTGATGAGGCCATG
GAAATCATCCATTCAGGCAACGAAACTATTGATCTGCTTTTAACGTCAATTGATGAGAATCGTGTATCTCGTTCTACCTT
CAAAAAGCACTCCGCGCAATCAGTGATTGAGGACTCAATCGACAGCTTTAACTACAAGCGCGCTGCAGACAAATCAGCCA
TATCTTTGGATGTGCAAAACGACTTTGACTTCTTAGGGAGTGATACCTTACTGAAGTACGTGATGTACAACCTATTCAAA
AATGCGTTCCATCATCGTAGCCCTGAAGATTTTCATATCCATGTCACCATGAGCAGTGATGACGTGACCAACCAAATCGT
AGTGACGGATAACGGATCTGGGATTTCGAGTGACGCTATCCGTCGCATCTTCCAAGATTTCTATACGACAGGTAAATCAG
GTAATTACGGGTTAGGCCTACCATTTTGTCAGAAGGTGATGCGCTCGTTTGGTGGTGAGATCAAATGCCAATCAGAGGTG
GAACAGTGGACTCAGTTCACGATGACATTCCCATCCTTGACGTCAAATTCCGTCAATGAAATTAAGAGTGAATTGAGGAA
ATTGAAGTCGGTACTGATGGTGAGTGATCAAACCGTGTTGACCAAAAAAATGACTGAGATGTCTCGATTTATGGGATTTG
ATCTTACGACTTTGGATGTGGCGTCAGCACTTAATAACAAAGAGTATCAGTTTGAATTTGATCTAGTCTTCGTAGACATG
GAGAGTTTGGATTTGAGGGTAAGCAGCCTTGATAAGCTTGAGTCTTTGTTGTCATTTACAGAGGCGCGAATTGTTTATCT
GTATGAGCATCATCCTGTTCACCGAGTTCGTAATGTGTCGTTTGAACCTATTTGGGTGGAGACACAAGTTTGGCTGCTGA
ACACCAAAGCAACGATTGACCGTTTACTGTTTGACTCGAATTACGTGATGCCTATGTTGGCCGCTAAGCCGATTGAAAAT
GCAAATAAGCGTACCATTATGGTCGTGGACGATAATGAATCTTTGCGTCGTTTTACGGCAATGTTACTGGAAAAGCAGGG
TTTTGATGTCGTACAGAAAGAAGATGGTCAGCAAGCATTAGATGCGCTGGATTCAGACGATGTAGACTTGATCCTGATGG
ATATCGAAATGCCTATCATGGACGGTGTAGAAGCGTCTCGACTCATTAGAAGTGCGAATAAGCCTTACTCTTCGGTACCG
ATCATTGCACATACAGGAGACAGCTCGCCAGTCACGCTAGAGAAGATGGAGTCATCAGGAATGTCGGACTTTATCATGAA
ACCCGCCGATAAAAACCGGCTGTTCGATAAGATTGCTCACTGGATATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

47.959

100

0.482

Multiple sequence alignment