Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | AAFX31_RS12740 | Genome accession | NZ_CP151941 |
| Coordinates | 1037770..1038375 (+) | Length | 201 a.a. |
| NCBI ID | WP_004738173.1 | Uniprot ID | - |
| Organism | Vibrio chagasii strain TBV018 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1032770..1043375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX31_RS12720 (AAFX31_12730) | - | 1032999..1033916 (-) | 918 | WP_061032478.1 | ABC transporter ATP-binding protein | - |
| AAFX31_RS12725 (AAFX31_12735) | - | 1034244..1035875 (-) | 1632 | WP_008222712.1 | SulP family inorganic anion transporter | - |
| AAFX31_RS12730 (AAFX31_12740) | can | 1036162..1036830 (+) | 669 | WP_411062147.1 | carbonate dehydratase | - |
| AAFX31_RS12735 (AAFX31_12745) | hpt | 1036903..1037433 (-) | 531 | WP_061032638.1 | hypoxanthine phosphoribosyltransferase | - |
| AAFX31_RS12740 (AAFX31_12750) | opaR | 1037770..1038375 (+) | 606 | WP_004738173.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| AAFX31_RS12745 (AAFX31_12755) | lpdA | 1039104..1040534 (-) | 1431 | WP_004738171.1 | dihydrolipoyl dehydrogenase | - |
| AAFX31_RS12750 (AAFX31_12760) | aceF | 1040776..1042680 (-) | 1905 | WP_411062148.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23225.44 Da Isoelectric Point: 6.2910
>NTDB_id=981397 AAFX31_RS12740 WP_004738173.1 1037770..1038375(+) (opaR) [Vibrio chagasii strain TBV018]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTNEELSTLTDSYLNMLCIYK
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTNEELSTLTDSYLNMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=981397 AAFX31_RS12740 WP_004738173.1 1037770..1038375(+) (opaR) [Vibrio chagasii strain TBV018]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAGCTGATGGAAATCGCGCTTGA
AGTATTCTCTCGTCGCGGCATTGGCCGTGGTGGTCACGCTGACATTGCAGATATCGCTCAGGTATCAGTAGCAACAGTAT
TTAACTACTTCCCTACTCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTCCGTCAATTCTCAAACTTCCTTTCA
GACAATATCGATCTAGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACACTAGTCGCTCAAGA
CAGCCACTGGTTGAACGTATGGTTCGAATGGAGCGCATCGACACGTGACGAAGTATGGCCACTGTTCGTAACAACAAACC
GCACTAACCAAATGTTGGTACAAAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTGTGTGACGATCACGATCCTAAG
CATCTTGCGAATCTGTTCCACGGCATCTGCTACTCGCTATTTATCCAAGCGAAACGTGTCGATACCAATGAAGAGTTGTC
TACTCTAACTGATAGCTACTTGAACATGCTGTGTATCTATAAGTAG
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAGCTGATGGAAATCGCGCTTGA
AGTATTCTCTCGTCGCGGCATTGGCCGTGGTGGTCACGCTGACATTGCAGATATCGCTCAGGTATCAGTAGCAACAGTAT
TTAACTACTTCCCTACTCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTCCGTCAATTCTCAAACTTCCTTTCA
GACAATATCGATCTAGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACACTAGTCGCTCAAGA
CAGCCACTGGTTGAACGTATGGTTCGAATGGAGCGCATCGACACGTGACGAAGTATGGCCACTGTTCGTAACAACAAACC
GCACTAACCAAATGTTGGTACAAAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTGTGTGACGATCACGATCCTAAG
CATCTTGCGAATCTGTTCCACGGCATCTGCTACTCGCTATTTATCCAAGCGAAACGTGTCGATACCAATGAAGAGTTGTC
TACTCTAACTGATAGCTACTTGAACATGCTGTGTATCTATAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
82.5 |
99.502 |
0.821 |
| hapR | Vibrio cholerae C6706 |
73.367 |
99.005 |
0.726 |
| hapR | Vibrio cholerae strain A1552 |
73.367 |
99.005 |
0.726 |