Detailed information NTG0981396

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: AAFX31_RS12575
• Genome accession: NZ_CP151941
• Coordinates: 990476..993865 (+)
• Length: 1129 a.a.
• NCBI ID: WP_186171222.1
• Uniprot ID: -
• Organism: Vibrio chagasii strain TBV018
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 985476..998865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX31_RS12550 (AAFX31_12560)	erpA	985774..986115 (-)	342	WP_004738231.1	iron-sulfur cluster insertion protein ErpA	-
AAFX31_RS12555 (AAFX31_12565)	hemL	986412..987707 (+)	1296	WP_102425339.1	glutamate-1-semialdehyde 2,1-aminomutase	-
AAFX31_RS12560 (AAFX31_12570)	-	987839..987964 (-)	126	WP_258166754.1	hypothetical protein	-
AAFX31_RS12565 (AAFX31_12575)	-	988041..989126 (+)	1086	WP_008222174.1	AI-2E family transporter	-
AAFX31_RS12570 (AAFX31_12580)	rsmC	989237..990259 (+)	1023	WP_411062144.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
AAFX31_RS12575 (AAFX31_12585)	chiS	990476..993865 (+)	3390	WP_186171222.1	response regulator	Regulator
AAFX31_RS12580 (AAFX31_12590)	-	994564..996246 (+)	1683	WP_008222178.1	ABC transporter substrate-binding protein	-
AAFX31_RS12585 (AAFX31_12595)	-	996416..997402 (+)	987	WP_004738220.1	ABC transporter permease	-
AAFX31_RS12590 (AAFX31_12600)	-	997405..998430 (+)	1026	WP_008222181.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127214.92 Da
• Isoelectric Point: 5.4892

>NTDB_id=981396 AAFX31_RS12575 WP_186171222.1 990476..993865(+) (chiS) [Vibrio chagasii strain TBV018]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSYIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGITFKRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGSDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTQNQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIRDKMQLIKSQNDELEDNLKTIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATEEELKNYNESGSYSHFKAPDLIDNTQQENSVINENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCETLRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AILYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=981396 AAFX31_RS12575 WP_186171222.1 990476..993865(+) (chiS) [Vibrio chagasii strain TBV018]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAACACCCTAATGCTGGCATTTCTTGTCCTTAGTATTAC
TCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGATCTTCAGGAACAAAGCACTTCGCACCTTGTTT
CTGTTCGTGATACTAAGCAACAACAGATTGTCGACTACCTACAGGCTCAAGAATCCCAAGTCATGGGCTTTGTTCGTTCA
GAACTAGCCAATGCCAGTGGCGGACGCTTCTATGGCTTAATCAATGCCTTCCAACGCCTAGGCTTGGATATTGACGAAGC
TCGCAGCAATGCTCAGCAACGTTATATCCAAGGTTCTGGTGATCAGATCAAAACATCCATTCTTCCAGAATCGAGCAGCT
ATATTGGTAGTGAACGTTATCGCCTACTGCATAAGCGCTATCATAACGCCTATCTAGAGTTGCTTAAGCGCTCCGATTTT
GACGATATTTTATTGGTTGATATCAACGGAAACGTTGCTTACTCCGTCTTTAAAAATGACGATTACGGCACTAACTTGCT
GACTGGTAAGTACAAGGACTCAAACCTAGGTATTACCTTCAAGCGCCTGGCCAAAGACGTCACAGACCGACGCAAGTCAA
ATGAAGATTACACGCCAGTTATTGTCTCTGACTTTAAGGACGAGAACGGTAAACAGACGGCATGGTTAGGTGCACCTATT
GTGCAGCAGGGTTACTTACACAGTTACGCGATGTTTAGGCTGCCAATCAACGGCATCACTAAGCTGATTGCCGATCTAAA
CAAGAGCTCTAACATTCAAACTTTGCTCGTTGGTAGTGACCACTTACCTCGTAGCCTCGCTCATTCGCAAGAATCTATCA
ATCTAAGCCTAGATGTAGTGGACAAAGCACTGGCTGGCGAAACCGCTGTTGGCACATTCGATAACACTCAGAATCAAGCC
ATCATTGCGGCCTATACACCTATTGAGCTTAAGTACGCCACTTGGGCTTTGGTCGTTGAGCTTCCAGAAAAAGAAGCCTT
CGCACGTATTCACCAGCTAGAAAAGATCTTCGTTATCGTCATGCTCACCGCCATCATTCTGGTGGTGGTTGCATCGCACT
ATTTATCAAACTTCATCACCTCCCCGCTGCTTAAACTGACATGGGCAGCCGAGAAAGTCTCTGCCGGAGACCTTGATGAA
ACCATGATCAATACAGAGCGCAAAGACGAAATCGGTCGCTTGGCTGTCAGCTTTGAGCGAATGCAACGTTCAATTCGTGA
CAAGATGCAGCTGATCAAGAGTCAAAATGATGAACTTGAGGACAACCTTAAGACCATCCAGAAACAAAATGATGAGTTAC
AGCTAGCCAACAAACTCAAAGATGAATTCTTAGCAACCACCTCACACGAATTGAGAACACCACTGCATGGTATGGTTGGT
ATTGCTGAAGCTCTAATATCGGGTGCGAATGGCCCTATTCCGGCGAACCAGAAATACCAGTTGGATATCATCATCAACAG
TGGTCAGCGACTAGCAACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGTTACGGTAGCTTGGACATTAAGAAAT
CTGCGGTTGATCTGTCTGCTGCCACCAGCTTGGTGCTTGAGCTATCTCATCACCTGTTGGGCAATAAACCGATTCGTATT
ATTAACCAAGTGCCGAGTGATTTAGGGCTAGTATCGTCCGATCCTCAGCGCCTTGAGCAGGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACATCAGAAGGTAAAATCGTTATCTCTGCGAGCGTAATCGACGACAACATTCGTGTACAAGTGG
TCGATACTGGCCAAGGCATACCAGCAGAGTATCTTGAACATATCTTCGAACCTCTGATTCAAGCAGGCCAAGACGCCAGT
AACTATCGCCAAGGTGCAGGCCTTGGCTTATCGATCAGTCGCCAGTTAATTGAGTTAATGGGTGGTTCGCTATACGTAAG
TAGCCAGCCAATGCTAGGTACTACGTTCAGCTTTACTCTGCCTCTGGCGACAGAAGAAGAACTTAAAAACTACAACGAAT
CAGGTAGCTACTCACACTTCAAAGCGCCTGACTTGATTGATAACACACAACAAGAAAACAGCGTCATCAATGAGAACCCT
GATGGCCCACTGCTGGTTATCGCGGATGATGAACCCGTTAACCTTCGTGTACTAGACAGCTTCTTGAAACTAGAAGGCTA
TCGAGTACGTACAGCCTGCGATGGCCCTGAAACCATCGAGTTGATCGAAAAAGAGAAGCCAGAACTATTGCTCCTCGATA
TCATGATGCCGGGCATGAGCGGCTATCAAGTGTGTGAAACACTGCGTAAGCAATATGACCATGCGCAACTACCGATCATA
ATGCTGACCGCGCTCAACCAAGCAGAAGACCGTGTACGCGGCTTCGAAGCTGGCGCTAATGACTATTTGTCTAAGCCATT
CAACAAACAAGAGCTAGCAGCTCGAATCACAGCACATCTATCAGCAAGTAAAGCTGAGCAGAGACGCCTTGAGAACGACC
AACTACAACTAGAGCTCAAGCACAGAGCGATGGTTGAAGCTAACTTGCTAGAAACTCAGGGACGTTTACTTGAGCAACTA
GAATCAGCGCCAGAGGCCATCATCTGCATTCGTGATGACCAACGCATTCGCTTTGCCAACGAAGCCGCAGCCAAGCTATT
TAGACGTGGCCAAGAGCAACTTAAGCGCTCAATGGCTGACGAAATTATCGCGCCTAAGTACCTAAAGGTGGAGCAAGCGC
ACTACTGTGGCGATATCGACATCTACATAGATGACACTCGTCAGCGCATACCGAGTGACATCCTCAAGTTACCTGAAGGC
TCTGGGCTAGACACCATGTACATCTTCAATGTTGGTGGTGGTGTGAACTCAAACCGTATCAATAACCTTGAGACGGCTGT
TGAAGCGCTTTCTAGCTATGCCTTTGAAGGTGATAAGGACAAATTGCAACAATTGAAAGAACTCGGTGGTGAGTTTACTC
GTCTGGCAGATAAAGCCACGGGAGAAGGTAAAAACAAACAAGAGTTAATGCGTGAAGTCTTAGTCGACGCGATGACCAAC
GCCATCCTCTACTGGGAATCTGTTACCGGAGAAACCAAGTTTGCGTTCGCAGAGAAGAGTGGCTTATGGCGCGTTTATCT
AGACAGAAGCACACTACAAACTCGAACGTTAGACAAATACCTACGTGTAGAAACGCTGCCTAAAACACCTCGCTGGCGAA
CAGTACTAAGCTCTATCGAGTTCATTCTCGAACACTGTAAAGAACAGACACCAGAGAGAACGCACATTGAGATGCTCAGA
GACAAACTACAGAAGTTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• PAS domain (PAS_8) (880-914)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.769