Detailed information NTG0981351

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAFX12_RS02495
• Genome accession: NZ_CP151938
• Coordinates: 517260..518246 (+)
• Length: 328 a.a.
• NCBI ID: WP_064368766.1
• Uniprot ID: A0AAW9AQQ0
• Organism: Vibrio alginolyticus strain TBV025
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 512260..523246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX12_RS02460 (AAFX12_02460)	ftsB	512270..512551 (+)	282	WP_005380907.1	cell division protein FtsB	-
AAFX12_RS02465 (AAFX12_02465)	ispD	512553..513260 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAFX12_RS02470 (AAFX12_02470)	ispF	513275..513751 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAFX12_RS02475 (AAFX12_02475)	truD	513797..514840 (+)	1044	WP_064368767.1	tRNA pseudouridine(13) synthase TruD	-
AAFX12_RS02480 (AAFX12_02480)	surE	514840..515616 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
AAFX12_RS02485 (AAFX12_02485)	-	515616..516242 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAFX12_RS02490 (AAFX12_02490)	-	516256..517179 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAFX12_RS02495 (AAFX12_02495)	rpoS	517260..518246 (+)	987	WP_064368766.1	RNA polymerase sigma factor RpoS	Regulator
AAFX12_RS02500 (AAFX12_02500)	mutS	518329..520890 (-)	2562	WP_005380877.1	DNA mismatch repair protein MutS	-
AAFX12_RS02505 (AAFX12_02505)	pncC	520975..521457 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
AAFX12_RS02510 (AAFX12_02510)	recA	521658..522701 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37422.35 Da
• Isoelectric Point: 4.7299

>NTDB_id=981351 AAFX12_RS02495 WP_064368766.1 517260..518246(+) (rpoS) [Vibrio alginolyticus strain TBV025]
MSISNTVTKVEEFAFDNASVKTIDNELERSSPTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=981351 AAFX12_RS02495 WP_064368766.1 517260..518246(+) (rpoS) [Vibrio alginolyticus strain TBV025]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCACCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAATAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854