Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AAFX12_RS01355 | Genome accession | NZ_CP151938 |
| Coordinates | 286892..287467 (+) | Length | 191 a.a. |
| NCBI ID | WP_064368815.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain TBV025 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 281892..292467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX12_RS01340 (AAFX12_01340) | oxyR | 282221..283132 (+) | 912 | WP_005381326.1 | DNA-binding transcriptional regulator OxyR | - |
| AAFX12_RS01345 (AAFX12_01345) | - | 283186..285747 (-) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
| AAFX12_RS01350 (AAFX12_01350) | pilM | 285892..286908 (+) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AAFX12_RS01355 (AAFX12_01355) | pilN | 286892..287467 (+) | 576 | WP_064368815.1 | PilN domain-containing protein | Machinery gene |
| AAFX12_RS01360 (AAFX12_01360) | pilO | 287460..288053 (+) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAFX12_RS01365 (AAFX12_01365) | pilP | 288043..288558 (+) | 516 | WP_064368814.1 | pilus assembly protein PilP | Machinery gene |
| AAFX12_RS01370 (AAFX12_01370) | pilQ | 288584..290329 (+) | 1746 | WP_206949731.1 | type IV pilus secretin PilQ | Machinery gene |
| AAFX12_RS01375 (AAFX12_01375) | aroK | 290517..291035 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AAFX12_RS01380 (AAFX12_01380) | aroB | 291068..292168 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22335.84 Da Isoelectric Point: 7.4657
>NTDB_id=981342 AAFX12_RS01355 WP_064368815.1 286892..287467(+) (pilN) [Vibrio alginolyticus strain TBV025]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
Nucleotide
Download Length: 576 bp
>NTDB_id=981342 AAFX12_RS01355 WP_064368815.1 286892..287467(+) (pilN) [Vibrio alginolyticus strain TBV025]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGCCTAAAGGTTGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGCCTAAAGGTTGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.199 |
100 |
0.822 |
| pilN | Vibrio cholerae strain A1552 |
62.712 |
92.67 |
0.581 |