Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFX34_RS16275 Genome accession   NZ_CP151937
Coordinates   1878093..1879586 (+) Length   497 a.a.
NCBI ID   WP_072614888.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873093..1884586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS16260 (AAFX34_16820) - 1874117..1874809 (+) 693 WP_072614890.1 tyrosine-protein kinase family protein -
  AAFX34_RS16265 (AAFX34_16825) - 1874806..1875624 (+) 819 WP_103175242.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  AAFX34_RS16270 (AAFX34_16830) - 1875648..1877936 (+) 2289 WP_411132316.1 ATP-binding protein -
  AAFX34_RS16275 (AAFX34_16835) luxO 1878093..1879586 (+) 1494 WP_072614888.1 sigma-54-dependent transcriptional regulator Regulator
  AAFX34_RS16280 (AAFX34_16840) - 1879579..1880712 (+) 1134 WP_011080507.1 glycosyltransferase -
  AAFX34_RS16285 (AAFX34_16845) - 1880820..1882013 (+) 1194 WP_072614887.1 glycosyltransferase -
  AAFX34_RS16290 (AAFX34_16850) - 1882010..1883188 (+) 1179 WP_103175241.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55796.88 Da        Isoelectric Point: 6.5948

>NTDB_id=981327 AAFX34_RS16275 WP_072614888.1 1878093..1879586(+) (luxO) [Vibrio vulnificus strain TBV029]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDIPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEVKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDCKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSLETQTSKANPLTHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=981327 AAFX34_RS16275 WP_072614888.1 1878093..1879586(+) (luxO) [Vibrio vulnificus strain TBV029]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAGCCCTA
TGACATTTTTCACGTAGAAACCGGACGTGACGCAATTCAGTTTATTGAGCGCAATACGCCTCAACTGGTGATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTCGACTGGATCAACCAAAACGATATTCCGACCGCGGTTATCATCGCC
ACCGCTCATGGTTCCGTTGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTGAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGGCCACGTTATCATGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCA
CCAACCACCGCCAGTGTTTTTATCAACGGAGAGAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
CCTACGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACTGGAGCGACAACCGACCGCAAAGGTGCGGCAATGCTGGCCAACGGCGGCACGTTGTTTCTC
GATGAATTGTGCGAAATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACTGGTACCTTCACCCCACTCGG
CGGCAGTAAAGAAGTCAAGGTGGATGTGCGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTTGTTCCCATTGAAATGCCGCCACTTAGAGAACGAGGTAATGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACTGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGCAAACATCCAAGGCCAATCCACTCACCCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCTATCGCCTTTTGCGATGGCAACGTGATCAGTGCAGCGGTGATGTTGGAACTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.617

97.787

0.495
  pilR Acinetobacter baumannii strain A118

37.014

98.39

0.364

Multiple sequence alignment