Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ABXG87_RS07475 Genome accession   NZ_AP031488
Coordinates   1605153..1607138 (-) Length   661 a.a.
NCBI ID   WP_070850181.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600153..1612138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS07445 (Ssa13956_14070) rsmI 1601372..1602238 (-) 867 WP_045769037.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABXG87_RS07450 (Ssa13956_14080) yabA 1602241..1602561 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  ABXG87_RS07455 (Ssa13956_14090) yaaT 1602548..1603354 (-) 807 WP_118172094.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  ABXG87_RS07460 (Ssa13956_14100) - 1603351..1604226 (-) 876 WP_118172093.1 DNA polymerase III subunit delta' -
  ABXG87_RS07465 (Ssa13956_14110) tmk 1604235..1604864 (-) 630 WP_353551378.1 dTMP kinase -
  ABXG87_RS07475 (Ssa13956_14120) recP/tkt 1605153..1607138 (-) 1986 WP_070850181.1 transketolase Machinery gene
  ABXG87_RS07480 (Ssa13956_14130) tpiA 1607398..1608156 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  ABXG87_RS07485 (Ssa13956_14140) tuf 1608411..1609607 (-) 1197 WP_002890213.1 elongation factor Tu -
  ABXG87_RS07490 (Ssa13956_14150) - 1609843..1611123 (-) 1281 WP_045002097.1 FtsW/RodA/SpoVE family cell cycle protein -
  ABXG87_RS07495 (Ssa13956_14160) - 1611411..1611827 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70833.51 Da        Isoelectric Point: 4.7666

>NTDB_id=98115 ABXG87_RS07475 WP_070850181.1 1605153..1607138(-) (recP/tkt) [Streptococcus salivarius strain NBRC 13956]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGIEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=98115 ABXG87_RS07475 WP_070850181.1 1605153..1607138(-) (recP/tkt) [Streptococcus salivarius strain NBRC 13956]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CAAGCCGTAACTGGACAAACCGAGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTGCTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTATTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTCGATATTGTTGACCATTATACTTATGCCCTCCATGGTGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGGCCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATCGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCATGCAAAAGGTGTTTATGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CTCGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCTTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATTATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564

Multiple sequence alignment