Detailed information NTG0981097

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAGA51_RS12895
• Genome accession: NZ_CP151842
• Coordinates: 2804877..2805875 (-)
• Length: 332 a.a.
• NCBI ID: WP_042480590.1
• Uniprot ID: A0A2J8H4Q7
• Organism: Vibrio diazotrophicus strain ATCC 33466
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2799877..2810875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGA51_RS12880	cysP	2799905..2800906 (-)	1002	WP_042480581.1	thiosulfate ABC transporter substrate-binding protein CysP	-
AAGA51_RS12885	cysM	2801120..2802010 (+)	891	WP_042480584.1	cysteine synthase CysM	-
AAGA51_RS12890	mutS	2802212..2804797 (+)	2586	WP_042480587.1	DNA mismatch repair protein MutS	-
AAGA51_RS12895	rpoS	2804877..2805875 (-)	999	WP_042480590.1	RNA polymerase sigma factor RpoS	Regulator
AAGA51_RS12900	-	2805947..2806870 (-)	924	WP_042480594.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAGA51_RS12905	-	2806870..2807496 (-)	627	WP_042480597.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAGA51_RS12910	surE	2807489..2808256 (-)	768	WP_042480600.1	5'/3'-nucleotidase SurE	-
AAGA51_RS12915	truD	2808249..2809295 (-)	1047	WP_042480602.1	tRNA pseudouridine(13) synthase TruD	-
AAGA51_RS12920	ispF	2809306..2809782 (-)	477	WP_042480605.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAGA51_RS12925	ispD	2809785..2810480 (-)	696	WP_042480608.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAGA51_RS12930	ftsB	2810480..2810761 (-)	282	WP_042480612.1	cell division protein FtsB	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38093.90 Da
• Isoelectric Point: 4.3594

>NTDB_id=981097 AAGA51_RS12895 WP_042480590.1 2804877..2805875(-) (rpoS) [Vibrio diazotrophicus strain ATCC 33466]
MSISNTVTKEEEFDLDIDSTEAVEVDAKLTTEDDDIDQAEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARR
ALRGDEAARRRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT
RTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDIN
NSDPEVSTQDDDIRDSLIAWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGL
NMESLFNVEAEA

Nucleotide

• Length: 999 bp

>NTDB_id=981097 AAGA51_RS12895 WP_042480590.1 2804877..2805875(-) (rpoS) [Vibrio diazotrophicus strain ATCC 33466]
ATGAGTATCAGCAATACAGTAACCAAGGAAGAAGAGTTTGACTTAGATATTGATTCAACAGAGGCTGTTGAAGTTGACGC
TAAGCTTACTACCGAAGACGATGACATTGACCAAGCGGAAGAAGTCCGTGAAGAGTTCGATGCTTCAACCAAAAGCTTAG
ATGCGACTCAGATGTATCTCAGCGAGATTGGTTTCTCACCTCTTTTAACCGCCGAAGAAGAAGTTCTTTATGCTCGCCGA
GCACTTCGTGGAGACGAAGCTGCAAGACGACGTATGATAGAAAGTAACTTACGTCTGGTGGTGAAAATATCCCGTCGTTA
TAGCAATCGTGGTCTCGCTTTACTGGATCTTATTGAAGAAGGTAACTTGGGCTTGATCCGCGCGGTTGAAAAATTCGATC
CAGAACGTGGATTCCGCTTTTCAACCTACGCCACTTGGTGGATCCGTCAAACGATTGAACGTGCGCTGATGAATCAAACT
CGTACGATTCGTTTACCAATACACGTAGTTAAAGAGCTCAATATCTATCTACGTACCGCACGTGAACTTTCGCAAAAACT
CGACCATGAGCCAACAGCGGAAGAGATCGCTTCTGAACTGGATAAACCGGTTGATGATGTCAGCAAGATGCTGCGTTTAA
ATGAACGTATCAGCTCTGTAGATACACCTATTGGTGGTGACGGGGATAAAGCGCTACTCGATATTATTCCTGATATTAAT
AACTCCGATCCTGAAGTTTCGACTCAAGATGATGATATCCGAGATTCATTGATTGCGTGGCTTGAAGAACTAAACCCTAA
ACAAAAAGAAGTGTTAGCACGACGCTTTGGTTTGTTAGGCTATGAGCCATCAACTTTGGAAGAAGTTGGACGTGAAATTA
ACCTGACTCGTGAACGTGTTCGTCAGATTCAGGTAGAAGGTTTACGTCGTTTGAGAGAGATTCTGATGAAACAAGGTTTG
AACATGGAATCTTTGTTCAACGTGGAAGCGGAAGCTTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (260-313)

• Sigma-70 region 3 (Sigma70_r3) (172-245)

• Sigma-70 region 2 (Sigma70_r2) (92-161)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (54-87)

3D structure

• AlphaFold DB: A0A2J8H4Q7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.048	100	0.87