Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAGA51_RS06090 Genome accession   NZ_CP151842
Coordinates   1345673..1347097 (-) Length   474 a.a.
NCBI ID   WP_042488467.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1340673..1352097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS06070 - 1342425..1343417 (+) 993 WP_342291552.1 EAL domain-containing protein -
  AAGA51_RS06075 cdd 1343488..1344375 (-) 888 WP_042488459.1 cytidine deaminase -
  AAGA51_RS06080 - 1344581..1345258 (-) 678 WP_042488461.1 LrgB family protein -
  AAGA51_RS06085 - 1345258..1345623 (-) 366 WP_042488464.1 CidA/LrgA family protein -
  AAGA51_RS06090 sbcB 1345673..1347097 (-) 1425 WP_042488467.1 exodeoxyribonuclease I Machinery gene
  AAGA51_RS06095 - 1347241..1347957 (-) 717 WP_042488470.1 NAD(P)H-binding protein -
  AAGA51_RS06100 cobT 1348123..1349151 (+) 1029 WP_042488475.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AAGA51_RS06105 - 1349151..1349951 (+) 801 WP_042488477.1 adenosylcobinamide-GDP ribazoletransferase -
  AAGA51_RS06110 cobU 1349948..1350502 (+) 555 WP_042488480.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AAGA51_RS06115 - 1350768..1351796 (+) 1029 WP_042488482.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54749.10 Da        Isoelectric Point: 5.2565

>NTDB_id=981092 AAGA51_RS06090 WP_042488467.1 1345673..1347097(-) (sbcB) [Vibrio diazotrophicus strain ATCC 33466]
MQQENSPTYFFFDYETWGTNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPAPEAALITGITPQKAMAQGLPEP
EFIARIHHELSQPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYSWSWQNSNSRWDLLDVMRACHALRPEGIVWPENEEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLLELSSEELHTRLYTKRDELAPDELPVPVKLVHLNKCPILAPAKTLTAENAD
KIGINREQCLANLALIRQHPEIREKLVSLFSIEREYEQSSDVDTQLYDGFFSPADKASMEIIRGTPPENLAALDITFADK
RIEPLLFRYRARHFPWTLDENEQRRWANHCRDFYESRIEGYMLNLENLVHEHESDEKKIAILKSVYQYVSKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=981092 AAGA51_RS06090 WP_042488467.1 1345673..1347097(-) (sbcB) [Vibrio diazotrophicus strain ATCC 33466]
ATGCAGCAGGAAAACTCGCCAACTTACTTCTTCTTCGATTATGAGACTTGGGGCACTAACCCAGCGAAAGATCGTCCTAG
TCAGTTTGCTGGCGTACGTACCGATATGGATTTTAATATTATCGGTGAACCATTAGTTATCTACTGCCAACTACCTAGCG
ATTATTTACCTGCACCTGAAGCGGCACTGATTACAGGTATCACGCCACAAAAGGCGATGGCTCAAGGTCTACCAGAGCCA
GAGTTCATTGCTCGTATTCATCACGAACTTTCTCAGCCAAATACCACCAGCCTTGGTTACAACAGCATTCGGTTCGATGA
CGAAGTCACGCGTTATACTTGCTATCGCAACTTTTTTGATCCGTATTCTTGGAGCTGGCAGAACAGTAACTCACGTTGGG
ACTTACTCGATGTGATGCGTGCTTGCCATGCCCTTCGTCCAGAAGGCATTGTTTGGCCTGAAAACGAAGAGGGTTTTACC
AGTTTCAAACTTGAACATCTGTCAAAAGCCAATGGTATTGAACACGAAAATGCGCATGATGCGATGGCTGACGTGATCGC
CACTATCGAACTGGCTAAGAAAGTCAAAGCCGCACAACCAAAGCTATTTGATTATTTCTTTACTATGCGCCATAAGCGCA
AACTCAATGAGTTGGTGGATATCGTCAATATGACACCACTAATGCATGTCTCCGGAATGTTAGGCAGAGAATGCCAATAC
ACCAGTTGGATTGTTCCTATTGCTTGGCATCCAACCAATCAAAATGCTGTGATTGTGGCTGACTTAGCCAAAGATCCTCA
GCCATTACTAGAACTTTCCAGTGAAGAATTGCATACGCGTCTTTATACAAAACGCGATGAACTCGCTCCAGACGAACTGC
CTGTCCCTGTCAAATTGGTTCATCTCAACAAGTGCCCTATTCTTGCACCTGCAAAAACGCTTACCGCCGAAAATGCAGAC
AAAATAGGCATCAATCGCGAACAGTGTTTAGCGAACTTAGCACTGATTCGCCAGCATCCAGAGATCAGAGAAAAGCTAGT
TTCTCTGTTTTCGATTGAGCGTGAATATGAACAGAGCTCCGATGTCGATACGCAGTTGTACGACGGTTTCTTCTCTCCGG
CGGATAAAGCGTCGATGGAAATTATCCGCGGTACACCACCAGAAAATTTGGCAGCACTGGATATCACTTTTGCGGACAAG
AGAATTGAACCTTTATTATTCCGTTATCGTGCCCGTCACTTCCCATGGACACTGGATGAAAATGAACAGCGTCGCTGGGC
GAATCACTGCCGTGATTTTTATGAGTCGCGAATTGAAGGTTACATGCTCAATTTAGAAAACTTAGTTCATGAGCATGAGA
GTGACGAAAAGAAAATTGCTATTTTAAAATCCGTCTATCAATACGTCTCAAAACTCGTTTCCTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.51

99.789

0.833

Multiple sequence alignment