Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AAGA51_RS02360 Genome accession   NZ_CP151842
Coordinates   501979..502587 (-) Length   202 a.a.
NCBI ID   WP_042484512.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 496979..507587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS02350 aceF 498326..500221 (+) 1896 WP_042484517.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  AAGA51_RS02355 lpdA 500473..501897 (+) 1425 WP_042484515.1 dihydrolipoyl dehydrogenase -
  AAGA51_RS02360 opaR 501979..502587 (-) 609 WP_042484512.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  AAGA51_RS02365 hpt 502898..503428 (+) 531 WP_042484511.1 hypoxanthine phosphoribosyltransferase -
  AAGA51_RS02370 can 503500..504168 (-) 669 WP_042484510.1 carbonate dehydratase -
  AAGA51_RS02375 - 504421..505332 (+) 912 WP_042484507.1 ABC transporter ATP-binding protein -
  AAGA51_RS02380 - 505342..506112 (+) 771 WP_042484505.1 ABC transporter permease -
  AAGA51_RS02385 panC 506227..507093 (-) 867 WP_042484502.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23461.86 Da        Isoelectric Point: 5.3562

>NTDB_id=981081 AAGA51_RS02360 WP_042484512.1 501979..502587(-) (opaR) [Vibrio diazotrophicus strain ATCC 33466]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLTHVVRQFSNFL
TDNIDLDLPAKENLSNITKELVEISYQDCYWLKVWFEWSASTRDEVWPLFMSTNRTNQMLVKNIFSKAIERGEVCDKHDP
EELTMLFHGLCYSLFVQANRVGDKDSINQLANTYMDMLCIYK

Nucleotide


Download         Length: 609 bp        

>NTDB_id=981081 AAGA51_RS02360 WP_042484512.1 501979..502587(-) (opaR) [Vibrio diazotrophicus strain ATCC 33466]
ATGGACGCATCTATTGAGAAACGCCCGAGAACACGGCTATCTCCCCAGAAACGTAAACTTCAACTAATGGAAATCGCGCT
AGAGGTTTTCGCCAGACGCGGCATTGGCCGTGGCGGACATGCTGATATCGCTGAAATCGCTCAAGTCTCAGTAGCTACGG
TATTCAACTACTTCCCTACTCGTGAAGACTTGGTGGATGAAGTTCTTACTCACGTGGTTCGTCAATTCTCTAACTTCTTA
ACCGATAATATTGATTTAGACTTACCAGCCAAAGAGAACCTAAGCAACATCACCAAAGAGCTAGTGGAAATCAGCTATCA
GGATTGCTATTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCAACTCGTGATGAAGTATGGCCACTCTTCATGTCGACCA
ACCGAACCAATCAAATGCTAGTGAAGAACATCTTCAGCAAAGCGATTGAACGTGGTGAAGTGTGCGATAAGCATGATCCA
GAAGAACTAACTATGCTGTTCCATGGTCTTTGCTACTCATTGTTTGTTCAGGCAAACCGAGTGGGAGACAAAGATAGCAT
CAACCAGTTAGCGAACACCTACATGGATATGCTGTGCATCTATAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.788

98.02

0.772
  hapR Vibrio cholerae C6706

74.257

100

0.743
  hapR Vibrio cholerae strain A1552

74.257

100

0.743

Multiple sequence alignment