Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAGA51_RS01225 Genome accession   NZ_CP151842
Coordinates   270881..272626 (+) Length   581 a.a.
NCBI ID   WP_042485093.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 265881..277626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS01205 pilM 268171..269181 (+) 1011 WP_042485081.1 type IV pilus assembly protein PilM Machinery gene
  AAGA51_RS01210 pilN 269171..269758 (+) 588 WP_042485084.1 PilN domain-containing protein Machinery gene
  AAGA51_RS01215 pilO 269751..270350 (+) 600 WP_342291518.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAGA51_RS01220 pilP 270347..270862 (+) 516 WP_042485090.1 pilus assembly protein PilP Machinery gene
  AAGA51_RS01225 pilQ 270881..272626 (+) 1746 WP_042485093.1 type IV pilus secretin PilQ Machinery gene
  AAGA51_RS01230 aroK 272813..273331 (+) 519 WP_042485096.1 shikimate kinase AroK -
  AAGA51_RS01235 aroB 273359..274444 (+) 1086 WP_042485100.1 3-dehydroquinate synthase -
  AAGA51_RS01240 - 274491..276014 (+) 1524 WP_042485103.1 AAA family ATPase -
  AAGA51_RS01245 - 276085..276906 (+) 822 WP_042485105.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63260.34 Da        Isoelectric Point: 4.4972

>NTDB_id=981076 AAGA51_RS01225 WP_042485093.1 270881..272626(+) (pilQ) [Vibrio diazotrophicus strain ATCC 33466]
MNKWLQIGLLALRRVLVTTSLCLIAPVVLANGDNAIPNQLNNIDFKINADKAAVIIIELASASSVVDVSKNDKGLNVELI
NTQISDDKLFVLDVSDFATVVETIEVFRQQPNGLLEVKVKGDYQYDYQLNKNVLEVVIRKSEPQPKQEQKALLEQDNKPI
SFNFQDIPVRNVLQLIADYNGFNLVVSDSVTGNMTLRLDGVPWQKALNIILEARGLDKRIDGNVILVAPKSELDLREQQE
LEKARMEEALGDLQSDIIKISFAKASDIAEMINGEGTLSMLSERGSISIDERTNALLIRELPENISVIRDIVKSLDVPVK
QVQIEARIVTVNEGDLEELGVRWGFTSTNGSHTSGGSIESNLFVSDLYESGGEGGDSGKGMVPLDDFLNVNLAATTAGAS
SIAFQIAKLGADTLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTELPYLEASSSGATTVSFRKAVLSLMVTPQI
TPDNRLVLDLSVTQDRVGDVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSLTSSVEKVPLLGDLPLLGALFRR
SYEKMGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=981076 AAGA51_RS01225 WP_042485093.1 270881..272626(+) (pilQ) [Vibrio diazotrophicus strain ATCC 33466]
ATGAATAAATGGCTTCAAATAGGGCTTCTAGCTCTCAGGCGTGTGTTGGTAACCACCAGTCTTTGTCTTATTGCACCTGT
GGTACTAGCAAATGGCGATAATGCGATTCCAAACCAACTCAACAATATTGATTTCAAAATTAATGCAGATAAAGCGGCGG
TCATCATCATTGAGCTAGCCTCTGCATCGTCAGTTGTGGATGTCTCAAAAAACGACAAAGGTTTAAATGTTGAGCTAATC
AATACACAAATTTCAGACGATAAATTGTTTGTTCTGGATGTCTCTGATTTCGCTACTGTTGTAGAGACGATTGAAGTATT
TCGTCAGCAACCAAATGGTCTTCTTGAGGTGAAAGTGAAAGGGGATTATCAATACGACTACCAGCTAAATAAGAATGTAT
TAGAGGTGGTGATCCGCAAGTCTGAGCCACAACCTAAACAAGAGCAGAAAGCTTTGTTAGAACAAGACAACAAGCCAATC
TCGTTTAATTTTCAAGATATCCCGGTTCGCAATGTATTACAGCTCATTGCGGACTATAACGGCTTTAACCTCGTGGTTTC
TGATTCGGTAACAGGCAATATGACACTGCGCTTGGATGGTGTGCCTTGGCAAAAAGCACTCAATATCATTCTTGAAGCGC
GAGGTTTGGACAAACGAATTGATGGTAATGTCATTTTGGTGGCACCAAAGAGCGAGCTTGACTTGCGTGAGCAACAAGAA
CTTGAGAAGGCGCGAATGGAAGAAGCGTTGGGCGATTTACAGTCCGATATCATTAAAATTAGCTTTGCCAAAGCCTCAGA
TATCGCCGAGATGATTAATGGCGAAGGAACGCTAAGTATGCTTTCTGAAAGAGGTTCAATCAGTATTGACGAAAGAACTA
ATGCACTATTGATTCGTGAATTACCAGAGAATATTAGCGTGATTCGAGACATCGTAAAGTCTTTGGATGTGCCAGTGAAA
CAAGTTCAGATTGAAGCCCGAATCGTGACGGTCAATGAAGGTGACCTAGAAGAACTTGGGGTTCGCTGGGGATTCACGTC
AACTAATGGCAGTCATACATCCGGAGGAAGTATTGAAAGTAATCTGTTTGTCTCGGATCTGTATGAATCTGGCGGTGAAG
GAGGTGATAGCGGGAAAGGTATGGTTCCGCTAGACGATTTTCTGAATGTAAATTTAGCCGCGACTACTGCGGGCGCATCA
AGCATTGCTTTCCAAATCGCTAAGTTGGGTGCAGATACACTGTTGGATTTGGAGCTTTCTGCGTTGCAAAGAGAGTCTAA
AGCCGAAATTATTTCCAGCCCGAGACTGATCACTACCAATAAGAAGCCTGCATATATCGAGCAAGGTACGGAATTACCTT
ATTTAGAAGCCTCTTCCAGCGGTGCGACCACCGTTTCATTTCGTAAGGCGGTGTTGAGCTTAATGGTAACGCCACAAATA
ACACCCGATAACCGTTTGGTTCTCGACCTCAGTGTGACTCAAGACCGTGTAGGAGATGTCGTAAAAACAGGTACAGGTGA
AGCGGTTGCGATTAATACTCAGAGAATCGGTACCCAAGTATTGGTCAACAATGGTGAAACAGTCGTATTGGGTGGTATTT
TTCAGCACAGTCTAACCAGCTCGGTTGAGAAAGTGCCTTTATTAGGTGATCTTCCGCTATTAGGTGCTTTATTCCGTCGA
AGCTACGAAAAAATGGGCAAAAGTGAACTACTAATATTCGTTACGCCTAAGGTGGTTATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(421-579)

Bacterial type II/III secretion system short domain (Secretin_N)

(257-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

72.371

96.558

0.699
  pilQ Vibrio cholerae strain A1552

72.371

96.558

0.699
  pilQ Vibrio campbellii strain DS40M4

71.813

95.869

0.688
  pilQ Legionella pneumophila strain Lp02

41.575

93.976

0.391
  pilQ Legionella pneumophila strain ERS1305867

41.575

93.976

0.391
  comQ Acinetobacter baylyi ADP1

39.51

98.451

0.389
  pilQ Pseudomonas aeruginosa PAK

39.318

95.869

0.377
  pilQ Acinetobacter baumannii strain A118

37.265

100

0.375
  pilQ Acinetobacter baumannii D1279779

37.265

100

0.375

Multiple sequence alignment