Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAFF32_RS08190 Genome accession   NZ_CP151802
Coordinates   1782711..1783109 (+) Length   132 a.a.
NCBI ID   WP_115843698.1    Uniprot ID   -
Organism   Lysobacter sp. FW306-1B-D06B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777711..1788109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF32_RS08175 (AAFF32_08175) tsaB 1779588..1780304 (+) 717 WP_342317036.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  AAFF32_RS08180 (AAFF32_08180) - 1780456..1781328 (-) 873 WP_216959994.1 energy transducer TonB -
  AAFF32_RS08185 (AAFF32_08185) gshB 1781325..1782296 (-) 972 WP_216959992.1 glutathione synthase -
  AAFF32_RS08190 (AAFF32_08190) pilG 1782711..1783109 (+) 399 WP_115843698.1 twitching motility response regulator PilG Regulator
  AAFF32_RS08195 (AAFF32_08195) - 1783128..1783493 (+) 366 WP_115843696.1 response regulator -
  AAFF32_RS08200 (AAFF32_08200) - 1783510..1784112 (+) 603 WP_216961802.1 chemotaxis protein CheW -
  AAFF32_RS08205 (AAFF32_08205) - 1784109..1786130 (+) 2022 WP_216959989.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14710.06 Da        Isoelectric Point: 7.1360

>NTDB_id=980933 AAFF32_RS08190 WP_115843698.1 1782711..1783109(+) (pilG) [Lysobacter sp. FW306-1B-D06B]
MLDEVRNGSLGGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIKN
NHLFKGTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLDAIRTHVNA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=980933 AAFF32_RS08190 WP_115843698.1 1782711..1783109(+) (pilG) [Lysobacter sp. FW306-1B-D06B]
ATGCTAGACGAGGTCCGCAACGGCAGCCTCGGCGGTTTGAAGGTCATGGTGATCGATGATTCCAAGACCATCCGCCGAAC
CGCCGAGACGTTGCTCAAGCGCGAGGGCTGCGAGGTGGTTACCGCCACCGACGGCTTCGAGGCGCTGGCGAAGATCGCCG
ATCAACAGCCGCAGATCATCTTCGTGGACATCATGATGCCGCGGCTGGATGGCTATCAAACCTGCGCGCTGATCAAGAAC
AATCATCTGTTCAAGGGCACGCCGGTCATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGACGTATCGT
CGGCTCCGAGCAGTACCTCACCAAACCATTCACACGCGAAGAACTGCTCGACGCGATCCGCACGCACGTAAACGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.194

93.939

0.697
  vicR Streptococcus mutans UA159

40.678

89.394

0.364

Multiple sequence alignment