Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AAFA15_RS17150 Genome accession   NZ_CP151713
Coordinates   3577554..3578027 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain F15-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572554..3583027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA15_RS17135 (AAFA15_17135) pilX 3575183..3576001 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA15_RS17140 (AAFA15_17140) pilW 3575998..3576999 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA15_RS17145 (AAFA15_17145) pilV 3577000..3577560 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA15_RS17150 (AAFA15_17150) fimU 3577554..3578027 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA15_RS17155 (AAFA15_17155) ispH 3578197..3579147 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA15_RS17160 (AAFA15_17160) gmk 3579270..3579899 (+) 630 WP_000015937.1 guanylate kinase -
  AAFA15_RS17165 (AAFA15_17165) rpoZ 3579972..3580250 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA15_RS17170 (AAFA15_17170) - 3580289..3580419 (+) 131 Protein_3357 hypothetical protein -
  AAFA15_RS17175 (AAFA15_17175) - 3580459..3582564 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=980515 AAFA15_RS17150 WP_001214065.1 3577554..3578027(-) (fimU) [Acinetobacter baumannii strain F15-02]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=980515 AAFA15_RS17150 WP_001214065.1 3577554..3578027(-) (fimU) [Acinetobacter baumannii strain F15-02]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment