Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA15_RS17135 Genome accession   NZ_CP151713
Coordinates   3575183..3576001 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F15-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3570183..3581001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA15_RS17120 (AAFA15_17120) pilE 3570400..3570825 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AAFA15_RS17125 (AAFA15_17125) pilY2 3570822..3571304 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA15_RS17130 (AAFA15_17130) pilY1 3571317..3575171 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA15_RS17135 (AAFA15_17135) pilX 3575183..3576001 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA15_RS17140 (AAFA15_17140) pilW 3575998..3576999 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA15_RS17145 (AAFA15_17145) pilV 3577000..3577560 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA15_RS17150 (AAFA15_17150) fimU 3577554..3578027 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA15_RS17155 (AAFA15_17155) ispH 3578197..3579147 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA15_RS17160 (AAFA15_17160) gmk 3579270..3579899 (+) 630 WP_000015937.1 guanylate kinase -
  AAFA15_RS17165 (AAFA15_17165) rpoZ 3579972..3580250 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA15_RS17170 (AAFA15_17170) - 3580289..3580419 (+) 131 Protein_3357 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980512 AAFA15_RS17135 WP_000149374.1 3575183..3576001(-) (pilX) [Acinetobacter baumannii strain F15-02]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980512 AAFA15_RS17135 WP_000149374.1 3575183..3576001(-) (pilX) [Acinetobacter baumannii strain F15-02]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment