Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | AAFA21_RS17135 | Genome accession | NZ_CP151709 |
| Coordinates | 3576515..3576988 (-) | Length | 157 a.a. |
| NCBI ID | WP_001214065.1 | Uniprot ID | N9K1Q3 |
| Organism | Acinetobacter baumannii strain F16-05 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3571515..3581988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA21_RS17120 (AAFA21_17120) | pilX | 3574144..3574962 (-) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| AAFA21_RS17125 (AAFA21_17125) | pilW | 3574959..3575960 (-) | 1002 | WP_000079197.1 | PilW family protein | Machinery gene |
| AAFA21_RS17130 (AAFA21_17130) | pilV | 3575961..3576521 (-) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| AAFA21_RS17135 (AAFA21_17135) | fimU | 3576515..3576988 (-) | 474 | WP_001214065.1 | GspH/FimT family pseudopilin | Machinery gene |
| AAFA21_RS17140 (AAFA21_17140) | ispH | 3577158..3578108 (-) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AAFA21_RS17145 (AAFA21_17145) | gmk | 3578231..3578860 (+) | 630 | WP_000015937.1 | guanylate kinase | - |
| AAFA21_RS17150 (AAFA21_17150) | rpoZ | 3578933..3579211 (+) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| AAFA21_RS17155 (AAFA21_17155) | - | 3579250..3579380 (+) | 131 | Protein_3354 | hypothetical protein | - |
| AAFA21_RS17160 (AAFA21_17160) | - | 3579420..3581525 (+) | 2106 | WP_001117590.1 | HD domain-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16837.43 Da Isoelectric Point: 8.5355
>NTDB_id=980421 AAFA21_RS17135 WP_001214065.1 3576515..3576988(-) (fimU) [Acinetobacter baumannii strain F16-05]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=980421 AAFA21_RS17135 WP_001214065.1 3576515..3576988(-) (fimU) [Acinetobacter baumannii strain F16-05]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |