Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA21_RS17120 Genome accession   NZ_CP151709
Coordinates   3574144..3574962 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F16-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3569144..3579962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA21_RS17105 (AAFA21_17105) pilE 3569361..3569786 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AAFA21_RS17110 (AAFA21_17110) pilY2 3569783..3570265 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA21_RS17115 (AAFA21_17115) pilY1 3570278..3574132 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA21_RS17120 (AAFA21_17120) pilX 3574144..3574962 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA21_RS17125 (AAFA21_17125) pilW 3574959..3575960 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA21_RS17130 (AAFA21_17130) pilV 3575961..3576521 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA21_RS17135 (AAFA21_17135) fimU 3576515..3576988 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA21_RS17140 (AAFA21_17140) ispH 3577158..3578108 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA21_RS17145 (AAFA21_17145) gmk 3578231..3578860 (+) 630 WP_000015937.1 guanylate kinase -
  AAFA21_RS17150 (AAFA21_17150) rpoZ 3578933..3579211 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA21_RS17155 (AAFA21_17155) - 3579250..3579380 (+) 131 Protein_3354 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980418 AAFA21_RS17120 WP_000149374.1 3574144..3574962(-) (pilX) [Acinetobacter baumannii strain F16-05]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980418 AAFA21_RS17120 WP_000149374.1 3574144..3574962(-) (pilX) [Acinetobacter baumannii strain F16-05]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment