Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA17_RS16800 Genome accession   NZ_CP151707
Coordinates   3531842..3532660 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F18-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526842..3537660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA17_RS16785 (AAFA17_16785) pilE 3527059..3527484 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AAFA17_RS16790 (AAFA17_16790) pilY2 3527481..3527963 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA17_RS16795 (AAFA17_16795) pilY1 3527976..3531830 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA17_RS16800 (AAFA17_16800) pilX 3531842..3532660 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA17_RS16805 (AAFA17_16805) pilW 3532657..3533658 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA17_RS16810 (AAFA17_16810) pilV 3533659..3534219 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA17_RS16815 (AAFA17_16815) fimU 3534213..3534686 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA17_RS16820 (AAFA17_16820) ispH 3534856..3535806 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA17_RS16825 (AAFA17_16825) gmk 3535929..3536558 (+) 630 WP_000015937.1 guanylate kinase -
  AAFA17_RS16830 (AAFA17_16830) rpoZ 3536631..3536909 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA17_RS16835 (AAFA17_16835) - 3536948..3537078 (+) 131 Protein_3290 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980371 AAFA17_RS16800 WP_000149374.1 3531842..3532660(-) (pilX) [Acinetobacter baumannii strain F18-02]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980371 AAFA17_RS16800 WP_000149374.1 3531842..3532660(-) (pilX) [Acinetobacter baumannii strain F18-02]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment