Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA18_RS01370 Genome accession   NZ_CP151702
Coordinates   281472..282290 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F19-10-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276472..287290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA18_RS01335 (AAFA18_01335) - 277054..277184 (-) 131 Protein_253 hypothetical protein -
  AAFA18_RS01340 (AAFA18_01340) rpoZ 277223..277501 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA18_RS01345 (AAFA18_01345) gmk 277574..278203 (-) 630 WP_000015937.1 guanylate kinase -
  AAFA18_RS01350 (AAFA18_01350) ispH 278326..279276 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA18_RS01355 (AAFA18_01355) fimU 279446..279919 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA18_RS01360 (AAFA18_01360) pilV 279913..280473 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA18_RS01365 (AAFA18_01365) pilW 280474..281475 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA18_RS01370 (AAFA18_01370) pilX 281472..282290 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA18_RS01375 (AAFA18_01375) pilY1 282302..286156 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA18_RS01380 (AAFA18_01380) pilY2 286169..286651 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA18_RS01385 (AAFA18_01385) pilE 286648..287073 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980210 AAFA18_RS01370 WP_000149374.1 281472..282290(+) (pilX) [Acinetobacter baumannii strain F19-10-4]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980210 AAFA18_RS01370 WP_000149374.1 281472..282290(+) (pilX) [Acinetobacter baumannii strain F19-10-4]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment