Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AAFA24_RS10040 | Genome accession | NZ_CP151697 |
| Coordinates | 2092828..2093208 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain F19-10-MH6 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2087828..2098208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA24_RS10010 (AAFA24_10010) | tadA | 2087947..2088450 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| AAFA24_RS10015 (AAFA24_10015) | - | 2088457..2089581 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AAFA24_RS10020 (AAFA24_10020) | ung | 2089578..2090291 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AAFA24_RS10025 (AAFA24_10025) | - | 2090342..2090938 (-) | 597 | WP_000908451.1 | 6-carboxytetrahydropterin synthase | - |
| AAFA24_RS10030 (AAFA24_10030) | gspK | 2091168..2092127 (-) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| AAFA24_RS10035 (AAFA24_10035) | xcpW | 2092127..2092828 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AAFA24_RS10040 (AAFA24_10040) | xcpV | 2092828..2093208 (-) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AAFA24_RS10045 (AAFA24_10045) | - | 2093198..2093752 (-) | 555 | WP_000841379.1 | type II secretion system protein | - |
| AAFA24_RS10050 (AAFA24_10050) | - | 2093762..2094370 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AAFA24_RS10055 (AAFA24_10055) | - | 2094408..2095181 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AAFA24_RS10060 (AAFA24_10060) | - | 2095199..2095540 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AAFA24_RS10065 (AAFA24_10065) | - | 2095552..2096532 (-) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| AAFA24_RS10070 (AAFA24_10070) | kdsB | 2096544..2097305 (-) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=980084 AAFA24_RS10040 WP_000836910.1 2092828..2093208(-) (xcpV) [Acinetobacter baumannii strain F19-10-MH6]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=980084 AAFA24_RS10040 WP_000836910.1 2092828..2093208(-) (xcpV) [Acinetobacter baumannii strain F19-10-MH6]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |