Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   R8566_RS10120 Genome accession   NZ_AP026920
Coordinates   1948801..1949811 (-) Length   336 a.a.
NCBI ID   WP_000990607.1    Uniprot ID   A0A0B7LZL8
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1943801..1954811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS10095 (PC0014_20020) - 1945012..1945305 (-) 294 WP_000977371.1 hypothetical protein -
  R8566_RS10100 (PC0014_20030) - 1945467..1945919 (+) 453 WP_000079148.1 universal stress protein -
  R8566_RS10105 (PC0014_20040) - 1945954..1947342 (-) 1389 WP_000453137.1 Cof-type HAD-IIB family hydrolase -
  R8566_RS10110 (PC0014_20050) - 1947408..1948370 (+) 963 WP_001124777.1 asparaginase -
  R8566_RS10115 (PC0014_20060) - 1948399..1948737 (-) 339 WP_001092049.1 hypothetical protein -
  R8566_RS10120 (PC0014_20070) ccpA 1948801..1949811 (-) 1011 WP_000990607.1 catabolite control protein A Regulator
  R8566_RS10125 (PC0014_20080) - 1950237..1950836 (-) 600 WP_000772072.1 response regulator transcription factor -
  R8566_RS10130 (PC0014_20090) - 1950838..1951935 (-) 1098 WP_000893545.1 sensor histidine kinase -
  R8566_RS10135 (PC0014_20100) - 1951935..1952672 (-) 738 WP_000832844.1 ABC transporter permease -
  R8566_RS10140 (PC0014_20110) - 1952674..1953558 (-) 885 WP_000219348.1 ABC transporter ATP-binding protein -
  R8566_RS10145 (PC0014_20120) - 1953545..1953739 (-) 195 WP_000820179.1 hypothetical protein -
  R8566_RS10150 (PC0014_20130) - 1953736..1953942 (-) 207 WP_000503437.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37073.01 Da        Isoelectric Point: 5.3212

>NTDB_id=97979 R8566_RS10120 WP_000990607.1 1948801..1949811(-) (ccpA) [Streptococcus pneumoniae strain PZ900700014]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGITYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=97979 R8566_RS10120 WP_000990607.1 1948801..1949811(-) (ccpA) [Streptococcus pneumoniae strain PZ900700014]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LZL8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.702

100

0.997

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment