Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AADZ70_RS10455 Genome accession   NZ_CP151679
Coordinates   2094955..2095599 (-) Length   214 a.a.
NCBI ID   WP_016938117.1    Uniprot ID   A0AAE2TM72
Organism   Bacillus sp. YBsi01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089955..2100599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS10420 (AADZ70_10420) - 2091140..2091571 (+) 432 WP_016938123.1 Na(+)/H(+) antiporter subunit B -
  AADZ70_RS10425 (AADZ70_10425) - 2091571..2091912 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AADZ70_RS10430 (AADZ70_10430) - 2091905..2093386 (+) 1482 WP_049627261.1 Na+/H+ antiporter subunit D -
  AADZ70_RS10435 (AADZ70_10435) - 2093392..2093868 (+) 477 WP_016938121.1 Na+/H+ antiporter subunit E -
  AADZ70_RS10440 (AADZ70_10440) - 2093868..2094152 (+) 285 WP_016938120.1 Na(+)/H(+) antiporter subunit F1 -
  AADZ70_RS10445 (AADZ70_10445) mnhG 2094136..2094510 (+) 375 WP_016938119.1 monovalent cation/H(+) antiporter subunit G -
  AADZ70_RS10450 (AADZ70_10450) - 2094550..2094933 (-) 384 WP_049627263.1 hotdog fold thioesterase -
  AADZ70_RS10455 (AADZ70_10455) comA 2094955..2095599 (-) 645 WP_016938117.1 response regulator transcription factor Regulator
  AADZ70_RS10460 (AADZ70_10460) comP 2095680..2097971 (-) 2292 WP_016938116.1 histidine kinase Regulator
  AADZ70_RS10465 (AADZ70_10465) comX 2097983..2098147 (-) 165 WP_007613432.1 competence pheromone ComX -
  AADZ70_RS10470 (AADZ70_10470) - 2098147..2099058 (-) 912 WP_029575319.1 polyprenyl synthetase family protein -
  AADZ70_RS10475 (AADZ70_10475) degQ 2099210..2099350 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  AADZ70_RS10480 (AADZ70_10480) - 2099816..2100157 (+) 342 WP_045925849.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=979698 AADZ70_RS10455 WP_016938117.1 2094955..2095599(-) (comA) [Bacillus sp. YBsi01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=979698 AADZ70_RS10455 WP_016938117.1 2094955..2095599(-) (comA) [Bacillus sp. YBsi01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCCGATGCCAGTGAACAGTTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAAGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCGGATAATGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment