Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AADZ70_RS07315 Genome accession   NZ_CP151679
Coordinates   1502278..1504008 (-) Length   576 a.a.
NCBI ID   WP_049626999.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497278..1509008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS07290 (AADZ70_07290) - 1497694..1497906 (+) 213 WP_327815271.1 spore germination protein -
  AADZ70_RS07295 (AADZ70_07295) - 1498031..1498243 (+) 213 WP_016939010.1 spore germination protein -
  AADZ70_RS07300 (AADZ70_07300) alr 1498429..1499610 (+) 1182 WP_016939009.1 alanine racemase -
  AADZ70_RS07305 (AADZ70_07305) spo0A 1499754..1500554 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  AADZ70_RS07310 (AADZ70_07310) spoIVB 1500834..1502114 (-) 1281 WP_198697863.1 SpoIVB peptidase -
  AADZ70_RS07315 (AADZ70_07315) recN 1502278..1504008 (-) 1731 WP_049626999.1 DNA repair protein RecN Machinery gene
  AADZ70_RS07320 (AADZ70_07320) argR 1504040..1504489 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  AADZ70_RS07325 (AADZ70_07325) - 1504586..1505431 (-) 846 WP_016939006.1 TlyA family RNA methyltransferase -
  AADZ70_RS07330 (AADZ70_07330) dxs 1505428..1507329 (-) 1902 WP_342007938.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AADZ70_RS07335 (AADZ70_07335) - 1507472..1508362 (-) 891 WP_342007939.1 polyprenyl synthetase family protein -
  AADZ70_RS07340 (AADZ70_07340) - 1508352..1508606 (-) 255 WP_342007940.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64038.88 Da        Isoelectric Point: 4.7614

>NTDB_id=979678 AADZ70_RS07315 WP_049626999.1 1502278..1504008(-) (recN) [Bacillus sp. YBsi01]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYQEGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHRELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=979678 AADZ70_RS07315 WP_049626999.1 1502278..1504008(-) (recN) [Bacillus sp. YBsi01]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGAGACATTAATGCCGGGGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATTGCGGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACA
ACCAGCTGTTAATGGAAGATGACAAACATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCATACCAAGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTCGAATTGAATGAAGACGAGCTTCTTC
AAGAAGAGCGGAAGCAAATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTAGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGTTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGCTAGATGATCTGGAGT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTC
GAAGACATTCTGGAATACGGCTCCAAAATAGAAGAGGAAATTGATCAAATCGAAAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCCTGGGCCA
AAAAACTGGCGGAAGCAATTCATCGGGAATTAAAAAGCCTGTATATGGGCAAATCAACGTTTGATACGGAATTCCTCGTG
AAAACCGATCCGTCTGCCAGTGAAGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGAATTGACCTCGT
GAAATTTTTAATTTCAACGAACACAGGTGAGCCGTTAAAACCGCTGTCAAAGGTCGCATCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGCTGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGATGAAGTGGACACTGGCGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTTTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTAA
CGCCGCTTTCAAAGCAGGATAAGGTAGCGGAAATCGGCCGTATGATTGCGGGTGTTGAAGTGACCGACCTGACAAAACGG
CATGCGCAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.236

100

0.892

Multiple sequence alignment