Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ACGHT2_RS09350 Genome accession   NZ_AP031455
Coordinates   1788146..1790971 (-) Length   941 a.a.
NCBI ID   WP_058692478.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783146..1795971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS09315 (K460107A9_17500) nusB 1784200..1784628 (-) 429 WP_003066329.1 transcription antitermination factor NusB -
  ACGHT2_RS09320 (K460107A9_17510) - 1784621..1785010 (-) 390 WP_012962452.1 Asp23/Gls24 family envelope stress response protein -
  ACGHT2_RS09325 (K460107A9_17520) efp 1785080..1785640 (-) 561 WP_003066333.1 elongation factor P -
  ACGHT2_RS09330 - 1785808..1785963 (+) 156 WP_236718684.1 hypothetical protein -
  ACGHT2_RS09335 - 1786053..1786343 (-) 291 WP_390578353.1 hypothetical protein -
  ACGHT2_RS09340 (K460107A9_17540) - 1786439..1786903 (-) 465 WP_009854890.1 deaminase -
  ACGHT2_RS09345 (K460107A9_17550) - 1786937..1787998 (-) 1062 WP_058692477.1 Xaa-Pro peptidase family protein -
  ACGHT2_RS09350 (K460107A9_17560) uvrA 1788146..1790971 (-) 2826 WP_058692478.1 excinuclease ABC subunit UvrA Machinery gene
  ACGHT2_RS09355 (K460107A9_17570) - 1791287..1792231 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  ACGHT2_RS09360 (K460107A9_17580) - 1792534..1793190 (+) 657 WP_013852223.1 DUF1129 domain-containing protein -
  ACGHT2_RS09365 (K460107A9_17590) - 1793235..1793666 (-) 432 WP_058692479.1 hypothetical protein -
  ACGHT2_RS09370 (K460107A9_17600) - 1793685..1793894 (-) 210 WP_009854897.1 helix-turn-helix transcriptional regulator -
  ACGHT2_RS09375 (K460107A9_17610) - 1793897..1794421 (-) 525 WP_058692480.1 DUF2975 domain-containing protein -
  ACGHT2_RS09380 (K460107A9_17620) rpsR 1794555..1794794 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACGHT2_RS09385 (K460107A9_17630) - 1794855..1795370 (-) 516 WP_003066357.1 single-stranded DNA-binding protein -
  ACGHT2_RS09390 (K460107A9_17640) rpsF 1795382..1795672 (-) 291 WP_003066359.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103882.14 Da        Isoelectric Point: 6.4766

>NTDB_id=97967 ACGHT2_RS09350 WP_058692478.1 1788146..1790971(-) (uvrA) [Streptococcus pasteurianus strain k46-0107-A9]
MQDKLIIRGARAHNLKNINVDIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARMFLGNMEKPDVDSIEGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDQVLELPERTRMQILAPVVRRKK
GQHKTIFDRIQKDGYVRVRVDGEIFDISEVPKLSKSKMHNIEIVVDRLINKDGIRSRLFDSVEAALRLADGYVIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGSKLEVDLDLVIPDRSKTLREGALAPWNPISSNYYPAML
EQAMTSFGIDMDTPFENLTEEEQNLVLYGSGEREFHFHYINDFGGERNIDLPFEGVVNNIDRRYHETNSDFTRNVMRGYM
NELPCATCHGYRLNNQALCVRVGGENGLNIGQVSDLSVADHLELLTHLELSENEKTIATPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMRQADWLI
DVGPGAGDFGGQIVASGTPEDVAKNKKSITGQYLSGAKEIPVPLERRKGNGRVLRVKGASENNLQNIDVTFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLNRNSAKPGKHKALEGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILDMTVNDAVEFF
APIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGQIVATGTPEEVAKVKESFTGQYLKDKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=97967 ACGHT2_RS09350 WP_058692478.1 1788146..1790971(-) (uvrA) [Streptococcus pasteurianus strain k46-0107-A9]
ATGCAAGATAAATTAATTATTCGTGGGGCACGTGCCCACAATTTAAAAAATATCAATGTTGACATTCCGCGGGATAAGTT
GGTTGTTGTGACTGGTTTGTCTGGTTCGGGAAAGTCAAGTTTGGCATTTGATACGATTTACGCAGAAGGGCAACGTCGTT
ATGTAGAAAGTTTGTCAGCTTATGCGCGTATGTTTCTTGGTAATATGGAAAAACCAGATGTTGATTCGATTGAAGGTCTC
AGCCCTGCTATTTCCATTGACCAAAAAACAACTAGTAAAAATCCTCGCTCTACGGTAGGGACAACGACAGAAATTAACGA
TTATCTGCGTCTTTTATATGCTCGCGTGGGGACGCCGTATTGTATCAATGGGCATGGTGCCATTACGGCATCATCTGTTG
AGCAAATTGTTGACCAAGTTTTGGAATTGCCAGAACGGACGCGAATGCAGATTTTAGCGCCAGTTGTGCGTCGTAAAAAA
GGACAACACAAGACGATTTTTGACCGTATTCAAAAAGATGGTTATGTGCGTGTGCGCGTGGATGGCGAGATTTTCGATAT
TTCAGAAGTTCCTAAGTTATCTAAGAGCAAAATGCACAATATCGAAATCGTTGTTGACCGTTTGATTAATAAAGACGGTA
TCCGTTCGCGCTTGTTTGATTCGGTGGAAGCTGCGCTTCGATTGGCTGATGGTTATGTGATTATTGATACTATGGATGGT
AATGAATTGCTCTTTTCAGAGCATTATTCATGTCCTGTTTGTGGTTTTACCGTTCCAGAATTGGAACCACGTCTTTTTTC
ATTTAACGCACCGTTTGGTTCATGCCCAACCTGTGATGGCTTGGGAAGCAAATTGGAAGTCGATTTGGATTTGGTGATTC
CTGACCGTAGTAAAACGCTTCGTGAAGGGGCTTTAGCACCGTGGAATCCAATCTCATCTAACTATTACCCAGCCATGCTA
GAACAAGCCATGACTTCTTTTGGTATTGATATGGATACACCATTTGAAAATTTGACAGAAGAAGAACAAAACTTGGTCTT
GTATGGCTCAGGCGAGCGTGAATTCCATTTCCACTATATCAATGACTTTGGTGGTGAACGTAATATCGACCTTCCGTTTG
AGGGAGTTGTCAATAATATTGACCGCCGTTATCATGAAACAAATAGTGACTTTACACGTAATGTTATGCGTGGTTACATG
AATGAATTGCCATGTGCAACTTGTCATGGTTATCGTTTAAATAATCAAGCACTTTGTGTTCGTGTTGGTGGCGAAAATGG
CTTAAATATTGGGCAAGTGTCTGATTTGTCAGTTGCTGACCACTTGGAACTTTTAACTCACCTAGAACTCTCTGAAAATG
AAAAGACGATTGCAACGCCGATTGTTAAGGAAATCAAAGACCGTCTGACCTTCTTAAATAATGTTGGCTTGAATTATTTG
ACCTTGTCGCGTTCTGCGGGGACTTTATCTGGTGGTGAAAGTCAGCGTATTCGCTTGGCAACGCAAATTGGTTCAAACCT
ATCAGGTGTCCTTTATATTTTGGATGAACCTTCGATTGGGCTTCATCAACGTGACAATGACCGTTTGATTTCAAGCTTGA
AAAAAATGCGTGATTTGGGCAATACCTTGATTGTCGTTGAACACGATGAAGATACCATGCGCCAAGCTGATTGGCTCATT
GATGTCGGACCAGGTGCAGGTGATTTTGGTGGGCAAATTGTTGCCTCTGGAACGCCAGAAGATGTTGCCAAAAATAAAAA
ATCAATTACAGGGCAATATTTGTCTGGAGCAAAAGAAATTCCTGTGCCACTAGAACGTCGTAAAGGAAATGGGCGCGTGC
TTCGTGTCAAAGGTGCTTCTGAAAATAACCTGCAAAATATTGATGTGACTTTCCCACTTGGTAAATTCATTGCGGTGACA
GGTGTTTCGGGTTCTGGAAAATCAACCTTGGTTAACAGTATTTTGAAAAAAGCTGTTGCTCAAAAATTAAATCGCAATTC
TGCCAAACCTGGTAAACACAAGGCACTTGAAGGTATTGAAAACATTGAACGCTTGATTGACATTGACCAAAGCCCAATCG
GTCGTACTCCGCGTTCAAATCCTGCAACTTACACAGGTGTTTTTGATGATATTCGTGACCTTTTTGCTAAGACCAATGAA
GCTAAGATTCGTGGTTACAAAAAAGGACGTTTCTCATTTAACGTCAAAGGTGGACGTTGCGAGGCTTGTTCTGGTGACGG
AATTATCAAAATTGAAATGCACTTCTTGCCAGATGTTTACGTACCTTGCGAGGTTTGTCATGGCACACGTTATAATAGTG
AAACGCTTGAAGTTCATTACAAAGACAAAAATATCGCTGAAATTCTTGATATGACAGTCAATGATGCGGTTGAATTCTTT
GCACCAATCCCTAAAATCGCACGCAAATTGCAAACTATCAAAGACGTTGGACTTGGTTATGTTACTCTCGGACAACCAGC
CACAACGCTGTCTGGTGGTGAAGCACAGCGTATGAAATTGGCGAGTGAACTTCACAAACGCTCAACTGGTAAGAGCCTTT
ATATCCTTGATGAACCAACGACAGGACTTCACACAGATGACATTGCTCGTCTGCTTAAAGTCCTTCAACGCTTCGTGGAT
GATGGAAATACCGTGCTTGTCATTGAACACAATCTTGATGTGATTAAGACAGCTGACCACATTATCGACCTTGGACCAGA
AGGCGGTGTCGGTGGTGGACAAATCGTTGCCACAGGCACACCAGAAGAGGTCGCCAAAGTTAAAGAATCCTTCACAGGAC
AATATTTAAAAGACAAATTGAAATAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.362

99.894

0.843
  uvrA Streptococcus pneumoniae TIGR4

84.362

99.894

0.843
  uvrA Streptococcus pneumoniae D39

84.362

99.894

0.843

Multiple sequence alignment