Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R8566_RS07985 Genome accession   NZ_AP026920
Coordinates   1555544..1556776 (-) Length   410 a.a.
NCBI ID   WP_050268913.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550544..1561776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS07960 (PC0014_15970) whiA 1551733..1552644 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  R8566_RS07965 (PC0014_15980) - 1552641..1553618 (-) 978 WP_001231086.1 YvcK family protein -
  R8566_RS07970 (PC0014_15990) rapZ 1553615..1554505 (-) 891 WP_000163035.1 RNase adapter RapZ -
  R8566_RS07975 (PC0014_16000) - 1554557..1554937 (-) 381 WP_001140412.1 RidA family protein -
  R8566_RS07980 (PC0014_16010) yihA 1554948..1555535 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R8566_RS07985 (PC0014_16020) clpX 1555544..1556776 (-) 1233 WP_050268913.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R8566_RS07990 (PC0014_16030) - 1556813..1556983 (-) 171 WP_000442260.1 hypothetical protein -
  R8566_RS07995 (PC0014_16040) - 1556983..1557489 (-) 507 WP_261203825.1 dihydrofolate reductase -
  R8566_RS08000 (PC0014_16050) - 1557619..1558137 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  R8566_RS08005 (PC0014_16060) lytC 1558634..1560138 (-) 1505 Protein_1579 choline binding-anchored murein hydrolase LytC -
  R8566_RS08010 (PC0014_16070) tpiA 1560176..1560934 (-) 759 WP_317642030.1 triose-phosphate isomerase -
  R8566_RS08015 (PC0014_16080) - 1561032..1561709 (-) 678 WP_000221604.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45808.39 Da        Isoelectric Point: 4.4550

>NTDB_id=97959 R8566_RS07985 WP_050268913.1 1555544..1556776(-) (clpX) [Streptococcus pneumoniae strain PZ900700014]
MPTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=97959 R8566_RS07985 WP_050268913.1 1555544..1556776(-) (clpX) [Streptococcus pneumoniae strain PZ900700014]
ATGCCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGCCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGATGAAAACAGCTCATATATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment