Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAEY34_RS24395 | Genome accession | NZ_CP151647 |
| Coordinates | 5220258..5221130 (+) | Length | 290 a.a. |
| NCBI ID | WP_023119819.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain HN148 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5215258..5226130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAEY34_RS24370 (AAEY34_24370) | nadC | 5215590..5216438 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AAEY34_RS24380 (AAEY34_24380) | - | 5216642..5217106 (-) | 465 | WP_031630343.1 | pilin | - |
| AAEY34_RS24385 (AAEY34_24385) | pilB | 5217336..5219036 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAEY34_RS24390 (AAEY34_24390) | pilC | 5219040..5220257 (+) | 1218 | WP_034014663.1 | type II secretion system F family protein | Machinery gene |
| AAEY34_RS24395 (AAEY34_24395) | pilD | 5220258..5221130 (+) | 873 | WP_023119819.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| AAEY34_RS24400 (AAEY34_24400) | coaE | 5221127..5221738 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| AAEY34_RS24405 (AAEY34_24405) | yacG | 5221735..5221935 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| AAEY34_RS24410 (AAEY34_24410) | - | 5221972..5222181 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| AAEY34_RS24415 (AAEY34_24415) | - | 5222287..5222976 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| AAEY34_RS24420 (AAEY34_24420) | - | 5222973..5223443 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| AAEY34_RS24425 (AAEY34_24425) | - | 5223440..5223865 (-) | 426 | WP_034048105.1 | GNAT family N-acetyltransferase | - |
| AAEY34_RS24430 (AAEY34_24430) | - | 5223998..5224627 (+) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| AAEY34_RS24435 (AAEY34_24435) | - | 5224624..5225073 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| AAEY34_RS24440 (AAEY34_24440) | - | 5225099..5225269 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31815.82 Da Isoelectric Point: 7.7068
>NTDB_id=979491 AAEY34_RS24395 WP_023119819.1 5220258..5221130(+) (pilD) [Pseudomonas aeruginosa strain HN148]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=979491 AAEY34_RS24395 WP_023119819.1 5220258..5221130(+) (pilD) [Pseudomonas aeruginosa strain HN148]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |