Detailed information NTG0979430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAC977_RS12490
• Genome accession: NZ_CP151640
• Coordinates: 2796956..2797942 (-)
• Length: 328 a.a.
• NCBI ID: WP_072955848.1
• Uniprot ID: A0A1M4WHS6
• Organism: Vibrio gazogenes strain DSM 21264
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2791956..2802942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAC977_RS12475 (AAC977_12430)	-	2792064..2794121 (+)	2058	WP_072955855.1	ATP-binding protein	-
AAC977_RS12480 (AAC977_12435)	hpxO	2794190..2795344 (-)	1155	WP_072955853.1	FAD-dependent urate hydroxylase HpxO	-
AAC977_RS12485 (AAC977_12440)	-	2795814..2796860 (+)	1047	WP_072955850.1	pectate lyase	-
AAC977_RS12490 (AAC977_12445)	rpoS	2796956..2797942 (-)	987	WP_072955848.1	RNA polymerase sigma factor RpoS	Regulator
AAC977_RS12495 (AAC977_12450)	-	2798024..2798932 (-)	909	WP_072955845.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAC977_RS12500 (AAC977_12455)	-	2798935..2799561 (-)	627	WP_072955843.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAC977_RS12505 (AAC977_12460)	surE	2799567..2800307 (-)	741	WP_072955840.1	5'/3'-nucleotidase SurE	-
AAC977_RS12510 (AAC977_12465)	truD	2800311..2801357 (-)	1047	WP_072955837.1	tRNA pseudouridine(13) synthase TruD	-
AAC977_RS12515 (AAC977_12470)	ispF	2801438..2801911 (-)	474	WP_072955834.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAC977_RS12520 (AAC977_12475)	ispD	2801945..2802637 (-)	693	WP_072955832.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAC977_RS12525 (AAC977_12480)	ftsB	2802638..2802919 (-)	282	WP_072955829.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37684.48 Da
• Isoelectric Point: 4.6075

>NTDB_id=979430 AAC977_RS12490 WP_072955848.1 2796956..2797942(-) (rpoS) [Vibrio gazogenes strain DSM 21264]
MSKSNSVTKVDQFDFDSGAFDLNTLDNEVSSDATSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIAFELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=979430 AAC977_RS12490 WP_072955848.1 2796956..2797942(-) (rpoS) [Vibrio gazogenes strain DSM 21264]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGGAGCGTTTGATCTCAATACATTGGACAA
CGAGGTCAGTTCTGACGCTACATCCGTTGAAACTCGAGAAGATTATGAAGTAACTTCCAAGAGCTTAGACGCAACTCAAC
TCTATTTAGGCGAAATCGGTTTTTCACCTTTGTTAACCGCAGAGGAAGAAATCCTGTACGCTCGTCGGGCTCTTCGGGGA
GATGAGGCCGCTCGTAAGCGAATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCGCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGTTTTTCTACGTATGCAACCTGGTGGATCAGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATCCACGTTGTCAAAGAACTCAATATTTATTTGCGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGTTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTTCGTCTGAACGAACGTATTA
GTTCTGTTGATACACCTATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCCAAACACTATGACCCA
GAATATTCGACAGAAGATGATGATATCAAATCTTCACTCTTACATTGGTTAGATGAACTAAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGTTTACTCGGGTATGAACCATCCACTTTAGAAGAAGTTGGGAAAGAGATTAATCTAACCCGTG
AGCGAGTTCGCCAAATCCAAGTCGAAGGCCTGCGTCGTTTAAGAGAAATTCTACTGAAACAAGGCTTGAATATGGAATCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1M4WHS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.835