Detailed information NTG0978976

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACL51_RS01100
• Genome accession: NZ_CP151537
• Coordinates: 210978..211850 (-)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA98zyfcau
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 205978..216850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACL51_RS01055 (AACL51_01055)	-	206839..207009 (-)	171	WP_003094672.1	DUF3094 family protein	-
AACL51_RS01060 (AACL51_01060)	-	207035..207484 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
AACL51_RS01065 (AACL51_01065)	-	207481..208110 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
AACL51_RS01070 (AACL51_01070)	-	208243..208668 (+)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
AACL51_RS01075 (AACL51_01075)	-	208665..209135 (+)	471	WP_116825342.1	FAD/FMN-containing dehydrogenase	-
AACL51_RS01080 (AACL51_01080)	-	209132..209821 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
AACL51_RS01085 (AACL51_01085)	-	209927..210136 (+)	210	WP_003094660.1	hypothetical protein	-
AACL51_RS01090 (AACL51_01090)	yacG	210173..210373 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
AACL51_RS01095 (AACL51_01095)	coaE	210370..210981 (-)	612	WP_116825344.1	dephospho-CoA kinase	-
AACL51_RS01100 (AACL51_01100)	pilD	210978..211850 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
AACL51_RS01105 (AACL51_01105)	pilC	211851..213068 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
AACL51_RS01110 (AACL51_01110)	pilB	213072..214772 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AACL51_RS01115 (AACL51_01115)	-	215003..215467 (+)	465	WP_023086642.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=978976 AACL51_RS01100 WP_023084740.1 210978..211850(-) (pilD) [Pseudomonas aeruginosa strain PA98zyfcau]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=978976 AACL51_RS01100 WP_023084740.1 210978..211850(-) (pilD) [Pseudomonas aeruginosa strain PA98zyfcau]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472