Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8613_RS02675 Genome accession   NZ_AP026919
Coordinates   505623..506354 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 500623..511354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS02650 (PC0012_05050) dnaK 500807..502630 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R8613_RS02655 (PC0012_05060) - 502632..502988 (+) 357 WP_024478407.1 hypothetical protein -
  R8613_RS02660 (PC0012_05070) dnaJ 503332..504468 (+) 1137 WP_050248575.1 molecular chaperone DnaJ -
  R8613_RS02665 (PC0012_05080) - 504848..505135 (-) 288 WP_000777760.1 hypothetical protein -
  R8613_RS02670 (PC0012_05090) - 505145..505555 (-) 411 WP_050282188.1 HIT family protein -
  R8613_RS02675 (PC0012_05100) pptA 505623..506354 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8613_RS02680 (PC0012_05110) - 506351..507400 (+) 1050 WP_050154083.1 ABC transporter permease -
  R8613_RS02685 (PC0012_05120) - 507568..507897 (-) 330 WP_000132575.1 hypothetical protein -
  R8613_RS02690 (PC0012_05130) - 508173..508511 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R8613_RS02695 (PC0012_05140) comE/blpR 508516..509253 (+) 738 WP_001219121.1 response regulator transcription factor Regulator
  R8613_RS02700 (PC0012_05150) - 509267..510607 (+) 1341 WP_001099893.1 sensor histidine kinase -
  R8613_RS02705 (PC0012_05160) blpC 510651..510806 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=97857 R8613_RS02675 WP_000889923.1 505623..506354(+) (pptA) [Streptococcus pneumoniae strain PZ900700012]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=97857 R8613_RS02675 WP_000889923.1 505623..506354(+) (pptA) [Streptococcus pneumoniae strain PZ900700012]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment