Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACAM23_RS08100 Genome accession   NZ_AP031394
Coordinates   1568488..1569084 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain 16P28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1563488..1574084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM23_RS08080 (SPNE16P28_16000) - 1564419..1565123 (-) 705 WP_001055242.1 TIGR02206 family membrane protein -
  ACAM23_RS08085 (SPNE16P28_16010) - 1565214..1565825 (-) 612 WP_000804586.1 NUDIX hydrolase -
  ACAM23_RS08090 (SPNE16P28_16020) murF 1565812..1567185 (-) 1374 WP_000778700.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ACAM23_RS08095 (SPNE16P28_16030) - 1567269..1568312 (-) 1044 WP_000814647.1 D-alanine--D-alanine ligase -
  ACAM23_RS08100 (SPNE16P28_16040) recR 1568488..1569084 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  ACAM23_RS08105 (SPNE16P28_16050) pbp2b 1569095..1571152 (-) 2058 WP_369608063.1 penicillin-binding protein 2B -
  ACAM23_RS08110 (SPNE16P28_16060) - 1571352..1572203 (+) 852 WP_000360334.1 MurR/RpiR family transcriptional regulator -
  ACAM23_RS08115 (SPNE16P28_16070) - 1572219..1573103 (-) 885 WP_219599510.1 ROK family protein -
  ACAM23_RS08120 (SPNE16P28_16080) - 1573121..1574038 (-) 918 WP_219599509.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=97705 ACAM23_RS08100 WP_000966743.1 1568488..1569084(-) (recR) [Streptococcus pneumoniae strain 16P28]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=97705 ACAM23_RS08100 WP_000966743.1 1568488..1569084(-) (recR) [Streptococcus pneumoniae strain 16P28]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAAGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment