Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   R8563_RS02460 Genome accession   NZ_AP026917
Coordinates   481744..482481 (+) Length   245 a.a.
NCBI ID   WP_001219126.1    Uniprot ID   A7XHJ0
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 476744..487481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS02425 - 477739..477915 (-) 177 WP_001810526.1 hypothetical protein -
  R8563_RS02430 (PC0007_04690) - 478076..478363 (-) 288 WP_000777753.1 hypothetical protein -
  R8563_RS02435 (PC0007_04700) - 478373..478783 (-) 411 WP_001278304.1 HIT family protein -
  R8563_RS02440 (PC0007_04710) pptA 478851..479582 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8563_RS02445 (PC0007_04720) - 479579..480628 (+) 1050 WP_000653771.1 ABC transporter permease -
  R8563_RS02450 (PC0007_04730) - 480796..481125 (-) 330 WP_000132572.1 hypothetical protein -
  R8563_RS02455 (PC0007_04740) - 481401..481739 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  R8563_RS02460 (PC0007_04750) comE/blpR 481744..482481 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8563_RS02465 (PC0007_04760) - 482495..483835 (+) 1341 WP_317636774.1 sensor histidine kinase -
  R8563_RS02470 (PC0007_04770) blpC 483880..484035 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  R8563_RS02475 (PC0007_04780) - 484092..485453 (-) 1362 WP_001069067.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28752.92 Da        Isoelectric Point: 6.2357

>NTDB_id=97703 R8563_RS02460 WP_001219126.1 481744..482481(+) (comE/blpR) [Streptococcus pneumoniae strain PZ900700007]
MRIFVLEDDFSQQTRIETTIEKLLKAHHIIPSSFEVFGKPDQLLAEVHEKGAHQLFFLDIEIRNEEMKGLEVARKIREQD
PYALIVFVTTHSEFMPLSFRYQVSALDYIDKALSAEEFESRIETALLYANSQDSKSLAEDCFYFKSKFAQFQYPFKEVYY
LETSPRPHRVILYTKTDRLEFTASLEEVFKQEPRLLQCHRSFLINPANVVHLDKKEKLLFFPNGGSCLIARYKVREVSEA
INNLH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=97703 R8563_RS02460 WP_001219126.1 481744..482481(+) (comE/blpR) [Streptococcus pneumoniae strain PZ900700007]
ATGAGAATATTTGTTTTAGAAGATGATTTTTCCCAACAGACTAGAATTGAAACGACGATTGAGAAACTTTTGAAAGCACA
TCATATCATTCCTAGCTCTTTTGAGGTATTTGGCAAGCCGGACCAACTGCTGGCAGAGGTGCATGAGAAGGGGGCCCATC
AGCTATTCTTTTTGGATATTGAGATTCGAAATGAAGAGATGAAGGGACTGGAAGTAGCTAGAAAGATTCGGGAACAAGAC
CCTTATGCCCTAATCGTCTTTGTGACGACTCACTCGGAGTTTATGCCTCTGTCCTTTCGCTACCAAGTGTCAGCTTTGGA
CTACATTGATAAGGCCCTTTCGGCAGAGGAGTTTGAATCTCGTATCGAGACAGCCCTCCTCTATGCCAATAGTCAAGATA
GTAAAAGTCTGGCGGAAGATTGCTTTTACTTTAAATCAAAATTTGCCCAATTCCAATATCCTTTCAAAGAGGTTTACTAT
CTCGAAACATCCCCAAGACCCCATCGTGTTATTCTCTATACCAAGACGGACAGGCTAGAATTTACGGCGAGTTTAGAGGA
GGTTTTTAAGCAGGAACCCCGTCTCTTGCAGTGCCATCGCTCTTTTCTCATCAATCCTGCAAATGTGGTGCATTTGGATA
AGAAAGAAAAACTCCTTTTCTTTCCCAATGGTGGAAGCTGTCTGATCGCGCGTTATAAGGTCAGGGAAGTGTCTGAGGCT
ATTAATAACTTACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-122)

LytTr DNA-binding domain (LytTR)

(151-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7XHJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

53.909

99.184

0.535
  comE/comE1 Streptococcus equinus JB1

43.882

96.735

0.424
  comE/comE2 Streptococcus equinus JB1

38.843

98.776

0.384

Multiple sequence alignment