Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACAM23_RS02800 Genome accession   NZ_AP031394
Coordinates   528228..529277 (+) Length   349 a.a.
NCBI ID   WP_000653779.1    Uniprot ID   A0A0H2UNU6
Organism   Streptococcus pneumoniae strain 16P28     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 523228..534277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM23_RS02775 (SPNE16P28_05400) - 524509..524865 (+) 357 WP_000114422.1 hypothetical protein -
  ACAM23_RS02780 (SPNE16P28_05410) dnaJ 525267..526403 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  ACAM23_RS02785 (SPNE16P28_05420) - 526725..527012 (-) 288 WP_000777760.1 hypothetical protein -
  ACAM23_RS02790 (SPNE16P28_05430) - 527022..527432 (-) 411 WP_001278301.1 HIT family protein -
  ACAM23_RS02795 (SPNE16P28_05440) pptA 527500..528231 (+) 732 WP_000889924.1 ABC transporter ATP-binding protein Regulator
  ACAM23_RS02800 (SPNE16P28_05450) pptB 528228..529277 (+) 1050 WP_000653779.1 ABC transporter permease Regulator
  ACAM23_RS02805 (SPNE16P28_05460) - 529445..529774 (-) 330 WP_000132583.1 hypothetical protein -
  ACAM23_RS02810 (SPNE16P28_05470) - 530051..530389 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  ACAM23_RS02815 (SPNE16P28_05480) comE/blpR 530394..531131 (+) 738 WP_001219136.1 LytTR family DNA-binding domain-containing protein Regulator
  ACAM23_RS02820 (SPNE16P28_05490) - 531145..532485 (+) 1341 WP_001017643.1 sensor histidine kinase -
  ACAM23_RS02825 (SPNE16P28_05500) blpC 532556..532684 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  ACAM23_RS02830 (SPNE16P28_05510) - 532741..534102 (-) 1362 Protein_557 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40505.54 Da        Isoelectric Point: 9.8750

>NTDB_id=97656 ACAM23_RS02800 WP_000653779.1 528228..529277(+) (pptB) [Streptococcus pneumoniae strain 16P28]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGTATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=97656 ACAM23_RS02800 WP_000653779.1 528228..529277(+) (pptB) [Streptococcus pneumoniae strain 16P28]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAACTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2UNU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment