Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | WMW89_RS12140 | Genome accession | NZ_CP151421 |
| Coordinates | 2548900..2549466 (+) | Length | 188 a.a. |
| NCBI ID | WP_002364599.1 | Uniprot ID | A0A1B4XKB5 |
| Organism | Enterococcus faecalis strain HMRC07H23 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2543900..2554466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMW89_RS12130 (WMW89_12120) | gyrA | 2545877..2548378 (+) | 2502 | WP_002361457.1 | DNA gyrase subunit A | - |
| WMW89_RS12135 (WMW89_12125) | rpsF | 2548553..2548855 (+) | 303 | WP_002356019.1 | 30S ribosomal protein S6 | - |
| WMW89_RS12140 (WMW89_12130) | ssb | 2548900..2549466 (+) | 567 | WP_002364599.1 | single-stranded DNA-binding protein | Machinery gene |
| WMW89_RS12145 (WMW89_12135) | rpsR | 2549492..2549731 (+) | 240 | WP_002356021.1 | 30S ribosomal protein S18 | - |
| WMW89_RS12150 (WMW89_12140) | - | 2549888..2551912 (+) | 2025 | WP_002363542.1 | DHH family phosphoesterase | - |
| WMW89_RS12155 (WMW89_12145) | rplI | 2551918..2552370 (+) | 453 | WP_104842125.1 | 50S ribosomal protein L9 | - |
| WMW89_RS12160 (WMW89_12150) | dnaB | 2552643..2554010 (+) | 1368 | WP_002381331.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20574.18 Da Isoelectric Point: 4.6010
>NTDB_id=976485 WMW89_RS12140 WP_002364599.1 2548900..2549466(+) (ssb) [Enterococcus faecalis strain HMRC07H23]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=976485 WMW89_RS12140 WP_002364599.1 2548900..2549466(+) (ssb) [Enterococcus faecalis strain HMRC07H23]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.638 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.85 |
100 |
0.543 |