Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   RBI96_RS22920 Genome accession   NZ_CP181075
Coordinates   4911135..4912160 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4906135..4917160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI96_RS22895 (RBI96_022895) - 4906324..4906641 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  RBI96_RS22900 (RBI96_022900) trkA 4906790..4908163 (-) 1374 WP_003097289.1 Trk system potassium transporter TrkA -
  RBI96_RS22905 (RBI96_022905) rsmB 4908190..4909494 (-) 1305 WP_014603454.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RBI96_RS22910 (RBI96_022910) fmt 4909491..4910435 (-) 945 WP_023098410.1 methionyl-tRNA formyltransferase -
  RBI96_RS22915 (RBI96_022915) def 4910490..4910996 (-) 507 WP_003097293.1 peptide deformylase -
  RBI96_RS22920 (RBI96_022920) tsaP 4911135..4912160 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RBI96_RS22925 (RBI96_022925) dprA 4912295..4913383 (+) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  RBI96_RS22930 (RBI96_022930) - 4913424..4913981 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  RBI96_RS22935 (RBI96_022935) - 4913991..4914968 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  RBI96_RS22940 (RBI96_022940) hemF 4915159..4916076 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RBI96_RS22945 (RBI96_022945) aroE 4916134..4916958 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=976477 RBI96_RS22920 WP_003097294.1 4911135..4912160(+) (tsaP) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=976477 RBI96_RS22920 WP_003097294.1 4911135..4912160(+) (tsaP) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393