Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8522_RS02515 Genome accession   NZ_AP026916
Coordinates   491133..491864 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain PZ900700006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 486133..496864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8522_RS02490 (PC0006_05060) - 487696..488052 (+) 357 WP_000114361.1 hypothetical protein -
  R8522_RS02495 (PC0006_05070) dnaJ 488454..489590 (+) 1137 WP_001066296.1 molecular chaperone DnaJ -
  R8522_RS02500 (PC0006_05080) - 489912..490196 (-) 285 WP_025169639.1 hypothetical protein -
  R8522_RS02505 (PC0006_05090) - 490358..490645 (-) 288 WP_000777760.1 hypothetical protein -
  R8522_RS02510 (PC0006_05100) - 490655..491065 (-) 411 WP_001278301.1 HIT family protein -
  R8522_RS02515 (PC0006_05110) pptA 491133..491864 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R8522_RS02520 (PC0006_05120) - 491861..492910 (+) 1050 WP_000653767.1 ABC transporter permease -
  R8522_RS02525 (PC0006_05130) - 493078..493407 (-) 330 WP_000132575.1 hypothetical protein -
  R8522_RS02530 (PC0006_05140) - 493684..494022 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  R8522_RS02535 (PC0006_05150) comE/blpR 494027..494764 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  R8522_RS02540 (PC0006_05160) - 494777..496117 (+) 1341 WP_050123659.1 sensor histidine kinase -
  R8522_RS02545 (PC0006_05170) blpC 496188..496316 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=97625 R8522_RS02515 WP_000889919.1 491133..491864(+) (pptA) [Streptococcus pneumoniae strain PZ900700006]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=97625 R8522_RS02515 WP_000889919.1 491133..491864(+) (pptA) [Streptococcus pneumoniae strain PZ900700006]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment